UFO11681.5prime Sequence
1141 bp (988 high quality bases) assembled on 2012-06-12
> UFO11681.5prime
CAGTCGACATGGCCCCAAGTTTGGGACAGTTGCCTCCTGAGATCGAGAAA
TGCAGGGCTGGCGATTCCATCTGCATAGCGGAAACAGTCACCAGGATTCT
GCGCTTGTATCCGAAGGGTCTGCCTTCCATTGGATTGGTTGCTCTGGACT
CCATTGGATTCGAGGATGTCGTCGTTAGTCGGTTGGAACCAGATGGGTCA
TCTACTTTTGATTTGAAATTCCCTAACCTAACCGTAATCGGATTCGCAGA
CTCCACAGTGACGGAGGCAAAGGGATTCGATGCGGATTTGCCTCGGGTCC
TCGAGTTGAGTGGCTGGATTCCATTGCTGAAACTCAATGGAACTTACGAG
ATGAGGGGCAGTTTGCTGACTATGCCCATTCATGGCAAAGGTCAAGCCAA
GGTGGAGATCAGAGAATGCCGCGTTCGTTGCAAAGTGCGAGTTCTGGAGG
ATCTCCGAGACGATGGCAAGCTATATGCCGGAATATCCAAGGTCAAGTGC
TTGCTGGATGTGCAGGGCATGCACTTGAACTTGGAAAATCTTTTCAACAA
TCCTGAAATGAGCGATGCCATGAACGTTGTGGCCAACACAAAGTGGCTGG
AAATTTGGCATAACCTTCGCAGGGGTATCACCTCTGCGGTGGATCAGTTG
GTCGAGTCGATTCTCCAGCGAGTAGCTAATAAGTTACCATATGACGATTT
GTATAGGGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATTTTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCCGCCTGCCCCTCATCGTGTACTGTTTGTAATTCATTAGCATTCTGCCG
ACATGAAGCCATCACAAACGGCATGGATGAACCTGAATCGCCAGCGGAAT
CAGCACTTGTTCGCCTTGGTATTAATTGCCAATATTGGGTGGTAAACGAG
GCGAAGAGAGTTGTCCTATATTGCCACGTTTTAAATCAACT
UFO11681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17279-RB | 810 | CG17279-RB | 29..730 | 9..710 | 3495 | 99.9 | Plus |
| CG17279-RC | 742 | CG17279-RC | 201..662 | 249..710 | 2310 | 100 | Plus |
| CG17279-RC | 742 | CG17279-RC | 29..201 | 9..181 | 850 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21050346..21050829 | 517..34 | 2405 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21050094..21050287 | 710..517 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:49 has no hits.
UFO11681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:30 Download gff for
UFO11681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 1..708 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:14 Download gff for
UFO11681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 23..736 | 1..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:55 Download gff for
UFO11681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 23..736 | 1..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:55 Download gff for
UFO11681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21050088..21050286 | 518..715 | 98 | <- | Minus |
| 3R | 21050346..21050829 | 34..517 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:14 Download gff for
UFO11681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16875810..16876008 | 518..715 | 98 | <- | Minus |
| arm_3R | 16876068..16876551 | 34..517 | 99 | <- | Minus |
