UFO11683.5prime Sequence
1094 bp (961 high quality bases) assembled on 2012-06-12
> UFO11683.5prime
CAGTCGACATGTTTATTGTGGCTGTAACTGGCGGTATCGCCACGGGAAAA
AGTACCATCAGCAAAGTGTTCGAACGCCAGGGTATTCCAGTCATCGACGC
CGACAAAATCGCCAGGGAGATTGTGGAACCAGGTCAGCCGTGCTGGCGGC
AGATTCGGGAAGTCTTCGGAGATGAGGTCCTCCTGCCCAGCAAGGAGATC
AACCGCGCTGTTCTGGGTAAGATGATCTTCGAGGACAAGGAGCTGCGCGG
AAAGCTGAACAAGATCACCCATCCGACCATCCATCGCAAGATCTTTTGGC
AAGTGTGCAAGCTGCTGGTCACGGGGCACGCGTGGATCGTCCTCGACCTG
CCACTGCTCTTTGAGACCGGCGTGCTGATGGACTTTATACACAAGATCGT
CTGTGTAACCTGCGACTCGGACAAGCAGCTGGAGCGATTAATAGCCCGCA
ATGAGCTCTCGGAATCGGAAGCCCGGCATCGCGTCGATTCACAAATGCCG
CTGGACAAGAAGTGCGAGAAGTCTCACTTCGTCATTGACAATAACGGGAG
CGTGGAGGAGGCGGAGAGCTCGGCCATGAGCATTTACAACCTGATGCGCG
ACTCCAAGCAGCACTGGCTGAACCGCATCAGCTTCCTGGGGCTGTTCCTA
ATCGTGGGCTTCACAATATATATGCTGCTGAAGGTGTTCAACCGGCTGCC
CGAGTCCTGTCAGATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAA
ACGCCCGGCGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATTTTATCACAGAGTCCAGCGTGCTCGATATTCAAATTAC
GCCCCGCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CGAAATTGAGCAATCACAAACCGCATGATGAACCTGATCGCCAGCGGCAT
CACGCACCTTGTCGCCTGGCGTATAATTTTGCCAATGGGTGAAA
UFO11683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpck-RA | 914 | CG1939-RA | 96..803 | 9..716 | 3525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7082836..7083140 | 412..716 | 1510 | 99.7 | Plus |
| 3R | 32079331 | 3R | 7082474..7082765 | 121..412 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 7082277..7082388 | 9..120 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:21 has no hits.
UFO11683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:24 Download gff for
UFO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 89..796 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:54 Download gff for
UFO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 96..803 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:41 Download gff for
UFO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 96..803 | 9..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:41 Download gff for
UFO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7082277..7082388 | 9..120 | 100 | -> | Plus |
| 3R | 7082474..7082765 | 121..412 | 100 | -> | Plus |
| 3R | 7082837..7083140 | 413..716 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:54 Download gff for
UFO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2907999..2908110 | 9..120 | 100 | -> | Plus |
| arm_3R | 2908196..2908487 | 121..412 | 100 | -> | Plus |
| arm_3R | 2908559..2908862 | 413..716 | 99 | == | Plus |
