UFO11684.5prime Sequence
1078 bp (996 high quality bases) assembled on 2012-06-12
> UFO11684.5prime
CAGTCGACATGCCTCGCACCAAGATTACAGCTCGTCGTCAGGCCCAGCGC
CAGAAGGCTGATCGCGAAGAGAAAGTGCGCCTGTCCCAAATCAAAATGGA
TTCGGCTCTGGAGAAGATCGATGAGATGAGCAAGCGCTACAAGCAAGAGG
TGGACAACCAAATTAAGGTGATCCGTGGTAGGACTGATAAGCAGCTACTG
CAAATGAAGATGCCAGAATTCTTGGCTCTCGGGTTTAAGACTTTTGCCGA
ATTTCAGAGGGCAGCTATTAAGCCGCCCACAACTCGCAGTTTGTCCATCA
GTCGTGGTCGAACACGAACTCCGCAGAATGCCCTGCCACCGAGGCTTCAG
GCGCATTCGGTGGACAGGGCTCTGAGTGGCGACACCATGAGCTTTGTGCG
ATGGCCCCGCGCCGGAGAGATGGTGCTCTCGAAGGCGGGAAGCCCGCTGG
CCGTCCAGATGCGTCCGGATCGCTATGCGGACGTCCACATTCCCACCAGG
GGCGGCGTGATCACCGTGAAACCGCACAAGATCAACACCGTGAAGCGGGA
AGTACTGATGCAGCTGGATGAGAACACACTCAACCAGGTGAAGACACTGA
ATGCCAATCTCGGATTAATTGTGGACATGGCCAACAAACTGGGCAAATTG
AAACCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACATG
GAAGCCATCAAAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCAC
TTGTCGCTTGCGTATAATATTTGCCATGGGTGAAACGGGGGGCGGAAGAA
AGTTGTTCATATTTGGCCACGTTTAATC
UFO11684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aust-RB | 929 | CG17009-RB | 35..682 | 9..656 | 3240 | 100 | Plus |
| aust-RA | 889 | CG17009-RA | 35..682 | 9..656 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9250295..9250689 | 656..262 | 1975 | 100 | Minus |
| 2L | 23513712 | 2L | 9250753..9251008 | 264..9 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:24 has no hits.
UFO11684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:25 Download gff for
UFO11684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 29..687 | 2..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:57 Download gff for
UFO11684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 29..687 | 2..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:43 Download gff for
UFO11684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 29..687 | 2..664 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:43 Download gff for
UFO11684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9250290..9250686 | 265..664 | 99 | <- | Minus |
| 2L | 9250753..9251014 | 2..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:57 Download gff for
UFO11684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9250290..9250686 | 265..664 | 99 | <- | Minus |
| arm_2L | 9250753..9251014 | 2..264 | 98 | | Minus |
