UFO11686.5prime Sequence
1116 bp (995 high quality bases) assembled on 2012-06-12
> UFO11686.5prime
CAGTCGACATGAGATTGATCTGGCTGCAGCTCCTGGCTGCTGGGGTTGCT
CTCTATCTGGCAAACGGTTGTGCAACGGCCGCCAAGGCATCCACAAGCCG
CGGAGTTGCACAATACAAGCTCCCGCTCCCTGCTCCATTGCCAGACCACG
AATCTGTCGCGGTTTCAGGCGCGGATCAGGCTAGGCGACAGCAGCAGCAG
CAGCAGAAGGGAGCATCCAACCAGCGAAGGCGCACTCAGGTCGTGCGGCG
GCGCAGGCCCTCCTCTACAACAACTACTTCATCCACCTCAACCACAACGA
CAACCACATCGACAACAACTACAACGACGACAACAACAACTCCGCGTCCC
AGCCTGGCCAACGGCTTCAACTTCTTTAATCGGAACTTCTGGAGTTTCGG
CCAGCAGAGTCTGGTGGCAGTGCGTCCGCCCACCAAGCAGGCCCATCCGC
CGAAAAAGTTTAGTCCCAAGGACGAAAAGTCCGGCCAACGAAAAGTGGCC
AAGACCACTAGGAAACCGATGGATCAGAGAACGAGTACAACTAGTCGAAG
CGCAACAACAACTAGCACACAAAAACCCACTACAGATGGACCCTTTCGCA
TTGCACTGCCCACCTTGAACTTCCCACGCGACAACCAGGATAAGAACAGG
GATAGGGAAACGGAGAAGGGCAAGAGGTCGGCTGCCGAGCTGCGCTTGAG
GTTCGATTGTCCGCGGGAGAACGAGGTGAGGTTCCAGCTATTCCCCAAGA
TCTGCAAGGCGGATCGAGACTGTGCCGTGTGGCAACGGGATGAGCTGTGC
TGTGATATCTTTGGAGCAAGCAGCTGTGTCTCTGGCGTTCCAAAGCCGCT
AGAGGAGACTCCCACATGCTCGTAAGTGGGTTGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATATCATAATCATAATCATA
ATCATATCACAACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGGATTC
TCCACATAAAAACGCCCGGGCGGCACGAGCGTTCTGAACAATTCAGAATG
GGAGTTCTGAGGTCATTACTGGATCTATAACAGGAGTCAGGCGAGCTCGA
ATTCAATTACCCTAGC
UFO11686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12947-RC | 1695 | CG12947-RC | 124..985 | 9..871 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9781697..9782238 | 340..882 | 2665 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9780187..9780517 | 9..339 | 1655 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2803..2990 | 184..373 | 142 | 57 | Plus |
UFO11686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:32 Download gff for
UFO11686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12947-RB | 116..1004 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:21 Download gff for
UFO11686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12947-RC | 116..985 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:01 Download gff for
UFO11686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12947-RC | 116..985 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:01 Download gff for
UFO11686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9780179..9780517 | 1..339 | 99 | -> | Plus |
| 3R | 9781697..9782246 | 340..891 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:21 Download gff for
UFO11686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5605901..5606239 | 1..339 | 99 | -> | Plus |
| arm_3R | 5607419..5607968 | 340..891 | 99 | == | Plus |
