UFO11687.5prime Sequence
1104 bp (958 high quality bases) assembled on 2012-06-12
> UFO11687.5prime
CAGTCGACATGACAACCTCGATGCAGCCGAGCAAGTACACGGGCCTGGTC
GCCGACCTGATGCCCAACATCCGGGCGATGAAGTACTCCGGCCTGTTCAT
GCACAACTTCACGGGCGGCAGTGCCTTCATGAAGAAGGTGTACTCCTCCG
TGCACCTGGTGTTCCTCCTCATGCAGTTCACCTTCATCCTGGTCAACATG
GCCCTGAACGCCGAGGAGGTCAACGAGCTGTCGGGCAACACGATCACGAC
CCTCTTCTTCACCCACTGCATCACGAAGTTTATCTACCTGGCTGTTAACC
AGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGAACACGCAT
CCCTTGTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTGGCGAA
GATGAGGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTCGGCCA
CCGCCTGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGGTGGTG
GACCATGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTGCCGAT
TAAGTCCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACATGATCA
GCTTTGCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACTCCAAT
CTATGCGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAGCAGCT
GCAGCACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGCCTCGC
TGGACACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGTCGGCC
AACTCCAGTCGGAGCTAATTCATAATGAAGAAAAGGATCCCGGCACCGAC
ATGACATGTCGGGCATCTACAGCTCGAAAGCGGATTGAGCGCTCAGTTTC
GAGCACCCTCGACACTGCAGTCCTTTGGCGGAACGGGGGCGGAGGCAACG
GGTTGGTGACGCGCTTATCCCACCGGCTGACCAAAAGCAGAAATGATGGT
GCGCATGCCATCAGTACTGGTCGAGCGCACAGCACTGGTGCACTGTTGCT
GCCATCGCGATCTACGGAACGCCCTCTCCTCATGCTGACCTCGAACATCA
GCTG
UFO11687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orco-RB | 1743 | CG10609-RB | 14..1130 | 9..1100 | 4875 | 97.1 | Plus |
| Orco-RA | 1929 | CG10609-RA | 200..1316 | 9..1100 | 4875 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5409031..5409548 | 830..314 | 2540 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5409616..5409923 | 316..9 | 1540 | 100 | Minus |
| 3R | 32079331 | 3R | 5408802..5408935 | 959..829 | 505 | 97 | Minus |
Blast to na_te.dros performed 2014-11-28 03:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 2432..2480 | 335..288 | 125 | 75.5 | Minus |
UFO11687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:33 Download gff for
UFO11687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or83b-RB | 11..1079 | 3..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:24 Download gff for
UFO11687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 193..1265 | 2..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:03 Download gff for
UFO11687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 193..1265 | 2..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:03 Download gff for
UFO11687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5408751..5408933 | 831..1005 | 93 | <- | Minus |
| 3R | 5409031..5409545 | 317..830 | 99 | <- | Minus |
| 3R | 5409616..5409927 | 1..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:24 Download gff for
UFO11687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1234473..1234655 | 831..1005 | 93 | <- | Minus |
| arm_3R | 1234753..1235267 | 317..830 | 99 | <- | Minus |
| arm_3R | 1235338..1235649 | 1..316 | 98 | | Minus |
