UFO11690.5prime Sequence
1080 bp (953 high quality bases) assembled on 2012-06-12
> UFO11690.5prime
CAGTCGACATGTTTAGTTTTCTGAGCATTGAGGCTAGGTCATTGGAGGAA
ACCTCTGTCAAGACGAAACGCGATACCGACTGGTGGACTATCCTCGAGGA
TATACTCTATGACAATGATAGTGATAGTGATGATGCCGGCGATGAGAACG
TTTTGATTTGTCGTAACTGCACGGTAGTTGTTCAAGCTGCTCCAAACGCC
ACAGCGAATGGAAGCACTGTAGCTCCGCAGGCAGGTGGAGCAGCTCCAGG
GAGTTCACCAGGTGCGCCTGCCACTCCTCCTGGCTCGACTCCTGCAGTTC
CAGCCACAGTTGCACCCGAAACGCCTGCTCCGTCGGCACCTGCGACATCG
CCACAACCTGTAGTAACTGCCCTACCCACAGCTGCCCCACCTACAGCTGC
CCCACCCACAGCTGCCCCTGGTGGTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAAACTCACCCAGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGAAATGGCCAGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTTGTAGAACTGCCGGAAATCGTCGTGCTATCCTCCAGAG
CGAATGAAAACGTTCAGTTGCTCATGCAAACGGTGTACAAGGGTGAACCT
TCCATATCACCAGCCTCACGTCTTTCATGG
UFO11690.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7443-RA | 616 | CG7443-RA | 62..478 | 9..425 | 2085 | 100 | Plus |
| CG7443-RB | 592 | CG7443-RB | 62..454 | 9..425 | 1715 | 94.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8324627..8324898 | 154..425 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 8324485..8324573 | 65..153 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 8324377..8324433 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:04 has no hits.
UFO11690.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:34 Download gff for
UFO11690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 43..465 | 9..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:27 Download gff for
UFO11690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 62..484 | 9..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:05 Download gff for
UFO11690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 62..484 | 9..433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:05 Download gff for
UFO11690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8324377..8324433 | 9..65 | 100 | -> | Plus |
| 3R | 8324486..8324573 | 66..153 | 100 | -> | Plus |
| 3R | 8324627..8324898 | 154..425 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:27 Download gff for
UFO11690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4150099..4150155 | 9..65 | 100 | -> | Plus |
| arm_3R | 4150208..4150295 | 66..153 | 100 | -> | Plus |
| arm_3R | 4150349..4150620 | 154..425 | 100 | == | Plus |
