UFO11691.5prime Sequence
1070 bp (953 high quality bases) assembled on 2012-06-12
> UFO11691.5prime
CAGTCGACATGCTTCGATTCAATTTAATCGTGGCAGTTTGCGAGAATTTC
GGAATCGGCATCAGAGGCGATCTACCATGGCGCATTAAATCTGAGCTGAA
GTACTTCAGCCGCACCACCAAGCGAACAAGTGATCCCACCAAGCAAAATG
CCGTGGTAATGGGCAGGAAAACCTACTTCGGAGTGCCGGAAAGCAAGAGG
CCTCTTCCCGATCGGCTGAACATAGTGCTGAGCACCACACTTCAGGAAAG
TGATCTGCCCAAGGGAGTACTATTGTGCCCCAATCTCGAGACGGCCATGA
AGATCCTTGAGGAGCAGAACGAAGTGGAGAACATTTGGATTGTGGGCGGT
AGTGGAGTCTACGAGGAGGCCATGGCCTCGCCAAGGTGTCACCGGCTGTA
CATTACCAAAATAATGCAGAAGTTCGATTGCGACACCTTTTTCCCCGCGA
TCCCTGACAGCTTTCGAGAGGTCGCGCCCGATTCCGACATGCCACTGGGT
GTGCAGGAGGAGAATGGCATTAAATTCGAGTACAAGATTTTGGAGAAACA
CTCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGCATCAGCACC
TTGTCCGCCTTGCGTATATATTTGCCATGTGAAACGGGGCGAAGAGTTGT
CCATATGCCACGTTTAATCACACTGTGAACTCACCAAGGATGGCTGAACG
AAACATATCTCAATAATCTTTAGATAGCAGTTCACGTAACACGCACATCT
TGCCATATTGTGTAGAACTG
UFO11691.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhfr-RB | 662 | CG14887-RB | 95..640 | 9..554 | 2730 | 100 | Plus |
| Dhfr-RA | 595 | CG14887-RA | 28..573 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16481391..16481856 | 89..554 | 2330 | 100 | Plus |
| 3R | 32079331 | 3R | 16481261..16481340 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:07 has no hits.
UFO11691.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:34 Download gff for
UFO11691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhfr-RA | 25..576 | 2..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:30 Download gff for
UFO11691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhfr-RA | 25..576 | 2..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:06 Download gff for
UFO11691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhfr-RA | 25..576 | 2..558 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:06 Download gff for
UFO11691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16481258..16481340 | 2..88 | 95 | -> | Plus |
| 3R | 16481391..16481859 | 89..558 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:30 Download gff for
UFO11691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12306980..12307062 | 2..88 | 95 | -> | Plus |
| arm_3R | 12307113..12307581 | 89..558 | 99 | == | Plus |
