UFO11694.5prime Sequence
1105 bp (1002 high quality bases) assembled on 2012-06-12
> UFO11694.5prime
CAGTCGACATGTATTTAACTCTGCTAAACGGTACTGGCTTCGTTTTCAAC
GTGGATGATTACATGGAACTGCGGAGCAAACATCGCATAATGGGTGCTCC
AGTGGGCACAGCGAACACAAAAGGCTGGAGTCCTAATCAATCCACTCTGC
CCGTGGAGCTCAGTAAATTTGAAACCCAATTGCTTTTGGATGAGAATATA
GCAAAGTTAGTTGATAAATCCAAAGATCTAAAGGCTAAACCCACTGCCGA
GAAACTTGAGGAGTGCAAGGCGGATTTTGAATCCCGGTTACTGGGACAGG
AGGAAGCATTGAAAACGGAGAAACTACGGGAAACTGAACGATACATGGAT
AAGATTCTGACGGGAAAACGCAAGAAGTTGCTCAAGCAGGGCAAAAATGA
ATTGGCTGCCGCTCTGACTGATAAGGATGTACTATTGGAGATGTCTGTGA
ATTTCAAATTCGATCGCCAAAATGCCTTGCTGGAGGTGCATTGTGAACAT
CCCACGGATCACTCTGCGCAAATAGTTACCGGTCCCATTGTGCACACCAA
TTCCCTGAAATACCGCGTTTTCAAAGATCTGTGGAGGCGCGGAAAGTACG
TGACTTCCGGCGATGCATTTGGAGCGGACTTTCTGGTTTACCCCGGCGAT
CCCATGATCTACCACGCCTCCCACATTGTAATTTTGCACGAGCAACCTGT
AATTAAGCCCCTGGAACTGATAGCAAAAGTTCGTCTATCGGTAATTGTCA
ACAAAAGCTGCGTTTTCGCCTACGAGATGGAAAATAATGAGGAAGAAATA
CATTACCAAACGGTCGCATGGTGCAATCTTGGAAAAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATATCATAATCACACTAGCCTAGAGATCTGTCATGACTAGTGCTGGA
TTCTCACAATAAATGACGCCCGCGCAACCGGAGCGTCTGACAATCCAGAT
GGAGTTCTGAGTCATACTGATCTATCACAGGAGTCAGCGAGCTCGAATTC
AAATACGCCCCGCCTGCCACTCAATCGCAGTACTGTGCATCATAAGCATC
TGCCG
UFO11694.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-RC | 902 | CG33260-RC | 13..840 | 9..836 | 4140 | 100 | Plus |
| Trl-RF | 2613 | CG33261-RF | 1..406 | 431..836 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14760582..14760904 | 836..514 | 1615 | 100 | Minus |
| 3L | 28110227 | 3L | 14761292..14761552 | 405..145 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 14760967..14761075 | 513..405 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 14761640..14761727 | 144..57 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 14761780..14761832 | 61..9 | 250 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:52 has no hits.
UFO11694.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:31 Download gff for
UFO11694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..843 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:16 Download gff for
UFO11694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..840 | 9..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:57 Download gff for
UFO11694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..840 | 9..836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:57 Download gff for
UFO11694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14760582..14760904 | 514..836 | 100 | <- | Minus |
| 3L | 14760967..14761074 | 406..513 | 100 | <- | Minus |
| 3L | 14761292..14761552 | 145..405 | 100 | <- | Minus |
| 3L | 14761640..14761726 | 58..144 | 100 | <- | Minus |
| 3L | 14761784..14761832 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:16 Download gff for
UFO11694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14754740..14754826 | 58..144 | 100 | <- | Minus |
| arm_3L | 14754884..14754932 | 9..57 | 100 | | Minus |
| arm_3L | 14753682..14754004 | 514..836 | 100 | <- | Minus |
| arm_3L | 14754067..14754174 | 406..513 | 100 | <- | Minus |
| arm_3L | 14754392..14754652 | 145..405 | 100 | <- | Minus |
