UFO11696.5prime Sequence
1067 bp (997 high quality bases) assembled on 2012-06-12
> UFO11696.5prime
CAGTCGACATGTTAAAGTCGCTAGCTCCGATCGAAGGAAACCAACAGCCC
GTGCTGCAGTTGCTCTGGGAGGACAAGGAGGTCAAATTTGATGTGCCTCA
ACTGCACAAGAACCTGCGGAGCGGAGAACGAGTGCTCGACTACATTTACC
ACATCGAAGACAGCAAAGGAAATCCGGGGGACACTGGTCGCCTGATGGTA
ACCAATTTGCGAATTATATGGCACTCGCTGGTCCACAAGAAGTACAATCT
GTCCATTGGCTATGCTCGGATTGGCAACACCAACACTCGGGTAGTTCATA
TGCACTCCAAAGCAAGGATAGCCAGCCAGGCCCTCTACATCCTGGCGGTA
AGCAACGAGACCCGCTTTGAGTTCCTTTTCACCGACGTATCTGGGGAAAC
GTCGCGTCGCGATCAGCCGATCTTCGCCAGCGTGTTCGACGTATATCACC
TTTATCAGCGTACTTATCTCTACCGCGACCTGAAGCTGCGCGGAGCCATC
GTTCAAGCGGGTCAACTGGTTATCCTACCAGATGAGGAGGTCTTTAGCCA
TGTGCAGGGCGTGTGGAATTTGTCTAGCGACCAGGGCAACCTGGGCAGCT
TCGTGGTAACCAATATTCGGCTGGTGTGGTTTGCAGATGCCAACGAGACC
TTCAACATCAGTCTACCATATCTACAGATTGAGAGTCTTCGCGTTCGGGA
GTCCAAGTACGGACCTGCTTTGGTAATCCAAACAGCGGAAACGGGAGGAG
GATATGTGCTCGGATTCCGTGTCGATCCCGCCGAGCGGCTAAACGAGTTG
TTCAAAGAGCTAAGCTCGCTGCACACAGTTTACGGCGAGCATCCCAACTT
TGGCATCCAATACAATGCGAATGACGCCAGGCGGCGATTGGAGGCGGCTT
CCGAGGAAGCTGCGCAGCCTCCCAGATCAAGGTGGATACTTCGAGGAGCT
GGACGAGCGCAGGAGCGGGAGATCACACCAAGCTTCAACAGCTACCTCGC
GAGGGCTTTTTGGGAAAGGTGCCCAGTCAGGCGAGAAGAGCTCTAGGTTA
ATCTGCCAAAGAACCTG
UFO11696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1126-RA | 1228 | CG1126-RA | 17..1055 | 9..1043 | 4990 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4817243..4817591 | 687..1031 | 1435 | 98 | Plus |
| 3R | 32079331 | 3R | 4816952..4817189 | 449..686 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 4816696..4816891 | 253..448 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 4816487..4816635 | 104..252 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 4816334..4816429 | 9..104 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:43 has no hits.
UFO11696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:37 Download gff for
UFO11696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 1..1044 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:29 Download gff for
UFO11696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 2..1045 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:48 Download gff for
UFO11696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 17..1060 | 9..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:48 Download gff for
UFO11696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4817243..4817612 | 687..1055 | 96 | -> | Plus |
| 3R | 4816334..4816428 | 9..103 | 100 | -> | Plus |
| 3R | 4816487..4816635 | 104..252 | 100 | -> | Plus |
| 3R | 4816696..4816891 | 253..448 | 100 | -> | Plus |
| 3R | 4816952..4817189 | 449..686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:29 Download gff for
UFO11696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 642056..642150 | 9..103 | 100 | -> | Plus |
| arm_3R | 642209..642357 | 104..252 | 100 | -> | Plus |
| arm_3R | 642418..642613 | 253..448 | 100 | -> | Plus |
| arm_3R | 642674..642911 | 449..686 | 100 | -> | Plus |
| arm_3R | 642965..643334 | 687..1055 | 96 | -> | Plus |
