UFO11705.5prime Sequence
637 bp (500 high quality bases) assembled on 2012-06-28
> UFO11705.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGCACAGGA
GATTTCACCTACGGAAATCGGCAAACACGCAAACATTATAAGAGCTGCAC
AGGAGGAATTGGCAAACATGGACGTTCTTGTATGTGGACGATGTCTCCGG
GCCTACAACTTCGTGGAAGAGTTTCAGGCCCACAAAGAGGACGCCTGCGA
AAAGGAAAATGCAAATTTGAAGGAATCGCTCGATCCCAAGCCCACCATCT
GGGCTTTTACGCTATGGAAAGCTACTCAGCTGCACTCGCGCAAGGACGCG
TCCGGCAGCTCGTGGGCCTTGTACCAGCATTGGGTAAAACTAGACGATAG
CGTCCGCGAGCCGTGGATTGGGGCTGGGAAGACCATACAGTCATTCGGCA
AAATTGCACACGGAAAACTCCAGGACATGCCTGGGCGAATAACAAAGACT
GGTGGTCAATCCAAACAATAACAACACATCAAATAGCAACAACAACAACA
CGAGCGTCTCCCCTACCAGAAAAATCACCAACCGGGTAGCTGCCTACGTT
AGCCCATCAACTAAGGATACAGAAAACGAAGACCCAA
UFO11705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chro-RE | 4056 | CG10712-RE | 376..926 | 87..637 | 2575 | 98.2 | Plus |
| Chro-RD | 3915 | CG10712-RD | 235..785 | 87..637 | 2575 | 98.2 | Plus |
| Chro-RA | 3871 | CG10712-RA | 191..741 | 87..637 | 2575 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22877450..22877877 | 571..143 | 2050 | 99.1 | Minus |
| 3L | 28110227 | 3L | 22877937..22877994 | 144..87 | 290 | 100 | Minus |
| 3L | 28110227 | 3L | 22877330..22877388 | 630..573 | 200 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:58 has no hits.
UFO11705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:40 Download gff for
UFO11705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RB | 156..704 | 87..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:31 Download gff for
UFO11705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RC | 91..639 | 87..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:17 Download gff for
UFO11705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chro-RA | 191..739 | 87..635 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:17 Download gff for
UFO11705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22877324..22877388 | 572..635 | 91 | <- | Minus |
| 3L | 22877450..22877875 | 145..571 | 99 | <- | Minus |
| 3L | 22877937..22877994 | 87..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:31 Download gff for
UFO11705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22870424..22870488 | 572..635 | 91 | <- | Minus |
| arm_3L | 22870550..22870975 | 145..571 | 99 | <- | Minus |
| arm_3L | 22871037..22871094 | 87..144 | 100 | | Minus |
