UFO11707.5prime Sequence
960 bp (822 high quality bases) assembled on 2012-06-28
> UFO11707.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATATCGGGC
GGCAATCAACATAATAACAATGCAAATCGCAAATATGAAAAACTCATTAA
GCAGCCGCAGATGCAATTTGGTAGCTCCGTGACCGGCACCCAAACGGATG
TGGATTCCTGCCGAGATGCGGACGCGGATGCGAATGCTGTCCGCCAGGAC
TTTAGCAATTTCAATAAGCATTTCGGCAATGGTCATGCCATCACGGATCG
CACAATGCTGCTGCGTTTGGAGGACGATGTCACCACCGCCGCCGGCATTG
TCACGTACAAGGGTAAATCGAATGGCAATGGAAATGGGAATGGGAACGGA
AGCATCGGGAGTATCAGTCTGGATTTCAACGGTAGTCCTACCTCATCAAC
GTCAATTGGCATCGCCAGCGGTAGCAGCAGCAACACCCACCTGGCCAGTG
GTGGTGGCGTTGGTGGAATCGGTGGCTCCGAGCCAGCCGGTTGGATGTGC
CATTGTTGTAATTTAATTGCACGTCGCTGCTTTGGCATCAACGTTCGACG
ATGTGTCCTGCGCTCCTGGCCATTACGATGGTTAGCATTTTCTACTACAC
GCATTATGTCGATACGGCGTGTTTAATGGACTTATTCAACGCGACACGCA
TCCCGCACCCATTATCACTGCCGCATGATCACTCTGGTGCAAACACATCC
GATGCCTCCCCAGCGCCGACCATCGTTCCGAGCTCGATTACGATCGATCC
CAGTCCTCGTTTTTGTGAGACCACATATCCGTCTCGCAGGACATTGCGAG
CTGCTCGTCTACATCGATCAATATAAATCGATGGCGGCAGAGTTTACAGT
CTACATCTCGACAGTCGTATGGCTGATTGGTTGAAACTGATAATACCCTC
AATGACAATG
UFO11707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sfl-RB | 5735 | CG8339-RB | 1274..2111 | 86..897 | 3570 | 96.9 | Plus |
| sfl-RA | 5772 | CG8339-RA | 1311..2148 | 86..897 | 3570 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6523501..6524096 | 86..679 | 2880 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6534492..6534652 | 679..828 | 325 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:23:02 has no hits.
UFO11707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:40 Download gff for
UFO11707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RB | 1274..2091 | 86..881 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:34 Download gff for
UFO11707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RA | 1311..2128 | 86..881 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:19 Download gff for
UFO11707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RA | 1311..2128 | 86..881 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:19 Download gff for
UFO11707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6523501..6524096 | 86..679 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:34 Download gff for
UFO11707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6516601..6517196 | 86..679 | 99 | -> | Plus |
