UFO11709.5prime Sequence
267 bp (192 high quality bases) assembled on 2012-06-28
> UFO11709.5prime
CAGTCGACATGCCGTCGTCAGCAATAAATAAAGCAGCACGCAGTGTTGCC
AATGCGATTCAATTGCTGGCAATCGTTCTCTATTGCTGCTGCATGGTGCA
TGGACAACAGCAGCAGCAGCAGCAGCAGCAGCTACAACCACAACAGCAGC
AACACTTGAAGTACCAGCAATTTGCAATACCAAATGCAGCAGCAATTTGA
ATACCAGCAGCAGCAGCACTACCAGCAGCATTTTCAGCAGCAGCAGCAGC
AACAGCAGCAACAGCAG
UFO11709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14431-RC | 7289 | CG14431-RC | 744..1003 | 7..267 | 1250 | 98.9 | Plus |
| CG14431-RB | 5404 | CG14431-RB | 744..1003 | 7..267 | 1250 | 98.9 | Plus |
| Trl-RK | 3145 | CG33261-RK | 1758..1805 | 105..152 | 195 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6917558..6917817 | 7..267 | 1225 | 98.9 | Plus |
| 3L | 28110227 | 3L | 14751582..14751629 | 152..105 | 195 | 93.8 | Minus |
| X | 23542271 | X | 10700442..10700496 | 104..158 | 185 | 89.1 | Plus |
| X | 23542271 | X | 9270926..9270976 | 154..104 | 180 | 90.2 | Minus |
| X | 23542271 | X | 10700439..10700486 | 104..151 | 180 | 91.7 | Plus |
| 3R | 32079331 | 3R | 31613420..31613470 | 104..154 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2014-11-28 03:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6874 | 107..267 | 372 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6907 | 105..267 | 364 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6923 | 104..259 | 357 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2483 | 100..267 | 340 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6944 | 104..265 | 318 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2527 | 105..266 | 313 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6856 | 127..267 | 300 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2929 | 105..266 | 260 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6956 | 105..250 | 260 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2431 | 138..263 | 249 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2956 | 106..266 | 241 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6944 | 105..244 | 239 | 66.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1179 | 80..209 | 224 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1532..1613 | 98..179 | 203 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1161 | 112..230 | 194 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2414..2563 | 98..244 | 193 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2909 | 109..267 | 186 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1153 | 105..170 | 186 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7033 | 105..267 | 181 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2791 | 105..266 | 178 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1633 | 105..213 | 177 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6944 | 98..214 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1595 | 123..201 | 132 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1011 | 109..150 | 129 | 78.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3247..3340 | 103..194 | 117 | 62.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 128..192 | 105..169 | 117 | 68.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9158..9222 | 105..169 | 117 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5633..5697 | 119..183 | 109 | 63.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3326 | 108..173 | 105 | 62.1 | Plus |
UFO11709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:41 Download gff for
UFO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14431-RB | 1..258 | 9..267 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:36 Download gff for
UFO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14431-RB | 739..1003 | 1..267 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:21 Download gff for
UFO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14431-RB | 739..1003 | 1..267 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:21 Download gff for
UFO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6917553..6917817 | 1..267 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:36 Download gff for
UFO11709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6811586..6811850 | 1..267 | 97 | | Plus |
