UFO11710.5prime Sequence
1132 bp (1018 high quality bases) assembled on 2012-06-28
> UFO11710.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGGAGGGTGCCAGTCGCAGCA
GGAACTCCTCCACGAGCCACAGTCAGGGTCGCGGCCAGGACATTGAGGAT
CTCAAGCAAGACATTCCCTACTTTGACGAACCGCCGGCGCTCGATGCCGA
TCTGCTTGTTCTGGGCAAGAGCGAATGCCAGCTGGACGAGCTGGCCTGGG
ATCGTGATGCGGATGGGGATGCGGATGCGCCGCTAGAGACGGCACCCGCC
GTCGATCTCGAGGAGGATAACTATCCGGATGAGAACGAGAGCTCGGTGCT
GGGCAGCGACTATGCGCCCAGTGGGAGTGGGAGTGGTGCGAACAGTTTCT
ACCAATCGCCGACGCCCTCTGCCACCGGATCTGGTTGCGATCTGATGCTC
CGACCGCCATCGAATTCCATGTACCATTTCAATTACCGATCGCCGGGTAG
TCCAATGCCTGTGGCTCCAGGAGTGACCAACTCACGAGGTCTGCATCCGT
ATGCACATTCCCCGGCGCATGGTAATCCGCCTGGTTTCTATCCGAATATG
TGGTATCCGAATGCACCATACGGATCGGCAGGAGCGGCAGGATCCGCCGG
AGGAGCCGTTTCCGGTGGCAGGTACATGGGCTATGGACCGGGCGGAGTGC
CAGGAGGAACCAATTCGGGTCCGGGTGCGGGTCCTGTAGCAATGCAAGCT
GCGTATCCTGACACTCGGCTCACATGCATGCGCTGCATCATCAATATCCG
CAGCCACATCCGCACGCCCACCACCCGCAGCATCCGCATCATTCACCACA
TCCGCACCACCCGCATCCGCACGAGACCATGATGGAGATGTTTCAGCTCT
CGAATAGTGGTCGAGAGCGCGAAACCGAGCGGAAAAGAATCGGCGGGACA
AACTGAACGGATCCATCCAGGAACTTATCCACAATGTGCCCCACGTGCGA
GTCGCCACGTCCGAGTGGAAAAAAACAGCCGTTCTGCGCTTTGCCGCCCA
TGCATTGCGATGAAAGCATGCCTTTGGCAACAGTCTGATGCAGCACCGAA
CCCCAGATTCACGGAACACCTGGAATGAACAT
UFO11710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gce-RE | 5120 | CG42739-RE | 930..1968 | 77..1115 | 4880 | 98.5 | Plus |
| gce-RD | 5063 | CG42739-RD | 873..1911 | 77..1115 | 4880 | 98.5 | Plus |
| gce-RC | 5524 | CG42739-RC | 1334..2372 | 77..1115 | 4880 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15310385..15311216 | 77..907 | 4095 | 99.8 | Plus |
| X | 23542271 | X | 15315085..15315250 | 906..1070 | 470 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:48 has no hits.
UFO11710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:36 Download gff for
UFO11710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gce-RD | 864..1915 | 69..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:23 Download gff for
UFO11710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gce-RC | 1325..2376 | 69..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:11 Download gff for
UFO11710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gce-RC | 1325..2376 | 69..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:11 Download gff for
UFO11710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15310385..15311216 | 77..907 | 99 | -> | Plus |
| X | 15315087..15315250 | 908..1070 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:23 Download gff for
UFO11710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15204418..15205249 | 77..907 | 99 | -> | Plus |
| arm_X | 15209120..15209283 | 908..1070 | 94 | -> | Plus |
