UFO11711.5prime Sequence
1125 bp (1007 high quality bases) assembled on 2012-06-28
> UFO11711.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGATATGGATTTGGAGCA
GCTAAAGAACGACTTCCTGCCGCTTATCGCCGGGATCAAGCAGGAGCAGC
TGGATGCCGTGCCCACGGATGCCCTGCCCCAGATGAGCACACCAAACACG
GCCAGCGGTGCGCCCACAACCTCGTCATTGAGCTCCTCTTCGCTGAGTCT
GAGCAACCCCTGCGACAGTGCCGAGAAAAGGTCGGAGTCAAACTCTTCGG
CATCAGCCAAGTTTACCCTTTTCAAGTGCGTTTACTGCGCTCAACTCCTC
GGATCCAACGATCGCCCCAAGCTGTTAGAATGCCTTCACGTGGCCTGTGC
CCAGTGCGTGAGCACCAAGTTCTCAGAGCTGGACCGTTCCCTGCCACCAT
TGATCCATTGTCCGGTATGCGACAATGCGTCGCAGCAGGAGTTCATCGTG
GACAACCAGTTCCTCATTGAGCAGTGCACCGCCGGAGACAGTGGCGATGG
GGTCGGACTTCTGGGTCTGACTGGCGAAGGTCAGAAGAGTTCCGCTGCGG
CGAGCATCCAGTGCAGCAGCTGCTCCGATGGTGCGGTGGCCACGTCGTGG
TGCGTTGACTGCTCGGAGTATATTTGCGACAGTTGTGTGCAAGCTCACCA
GCGCCTGAAGATCACCAAGGATCACACGATCAAGCCCAAAGATGAGGCCA
ACAACGAGCAGCTGGCCGGAGCTGCCGGGGTGGACAAGTTGCACATGTGC
CAGTTGCATCCGCAGGAGAAGCTTTCGCTATTTTGCGAGACCTGCGACAA
GCTCACTTGTCGGGATTGCCAGTTGAGCGACCATCGGGATCACAAATACA
AGTTTGCGCACGAGATTGCCACGGAATCGCGACAGGCGCTGTCCACACTC
GTTTCCGAAATCAACTACAAACGCTTCCTTCTCTCCTCGGCACCAGGTTA
TTGATGACGCACAGCTGATCCACGAACAAGAAGAAAAGACTCATCAGAGA
TCCACAGCCATGGGCGGGAGATCCACCATACCGTCATACCCGGAGGCCAG
CAGCCTAATCACTAGGAGAATTGTG
UFO11711.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bon-RF | 5778 | CG5206-RF | 704..1741 | 79..1111 | 4740 | 98 | Plus |
| bon-RE | 5787 | CG5206-RE | 704..1741 | 79..1111 | 4740 | 98 | Plus |
| bon-RD | 5769 | CG5206-RD | 704..1741 | 79..1111 | 4740 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20606280..20607009 | 281..1008 | 3570 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20593842..20594044 | 79..281 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:51 has no hits.
UFO11711.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:38 Download gff for
UFO11711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RB | 678..1684 | 72..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:25 Download gff for
UFO11711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RD | 698..1704 | 72..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:13 Download gff for
UFO11711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RD | 698..1704 | 72..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:13 Download gff for
UFO11711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20593836..20594044 | 72..281 | 98 | -> | Plus |
| 3R | 20606281..20607078 | 282..1073 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:25 Download gff for
UFO11711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16419558..16419766 | 72..281 | 98 | -> | Plus |
| arm_3R | 16432003..16432800 | 282..1073 | 98 | | Plus |
