UFO11715.5prime Sequence
1021 bp (922 high quality bases) assembled on 2012-06-28
> UFO11715.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGCATGATCCAGGGAGCAG
CAGCCGCCTATCAGGAGCCGCATCCGCAGCAGCAGGGACCGCGTCAGCTG
GAGCTATAGCTGCAGCCGTAGGAGCAGCTGCTGCCTCGCGGCACGACAAT
AAGACACAGCTTGGCAACGGCAGCCGCAGTAAGATGTGGATATGCATCAA
ATGTTCCTATGCCTACAACCGACTCTGGCTCCAGACTTGCGAGATGTGCG
AGGCCAAAGCCGAACAGCAGCAACAGCAGTTGCAGCTGCAACAGCAGCAG
CAGCAGCAGCAGCAGCACCACCACCACCACTTGCAGCAGCAACAGGCAGA
AGCACCCCGCGACGAGCCATGGACCTGCAAGAAGTGCACCCTGGTTAACT
ACTCGACAGCAATGGCCTGCGTGGTGTGCGGCGGCTCCAAGCTGAAAAGC
ATCTCTTCCATCGAGGACATGACGTTGCGAAAGGGCGAGTTCTGGACCTG
CAGCCACTGTACGCTCAAGAACTCGCTGCACTCGCCGGTCTGCAGTGCCT
GCAAGTCCCACCGCCAGCCGCAGCTCTCGATGGCCATGGAGGCGGTACGG
GAGCGACCGGATGGTCAGTCGTACGAGGAGCAGATGCTGCAGCCGTCGGG
GGCGGAGAGCAGTGCCCACCAATCGGGCGCCAATGAGTCAAGGCGCCTAC
AGCCTTGAACCTACCGCTAACTTCGTGGCGTTGCCCATGCCCATGCTGCA
GCTTCAACGTCAACAGCGGCTGGTCTGCGCGGCTCACGCAGTCCCTCGCC
AGGATGCAGCTGCTGCATCACTCAGCAGCAGAGGAACTCAGCTCATCGGC
GCTATACTAAACGTCACAGCACGCGCTCATGTGCACGACATCATCGCTGC
TGCATACATGCAGCAGCCAGATCGTCGATCGTAGTGCTCGAACTGATCGA
CTGACTGCGACGTACAGCCAG
UFO11715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RF | 5153 | CG1391-RF | 1673..2526 | 81..922 | 3970 | 98.6 | Plus |
| sol-RB | 5592 | CG1391-RB | 2112..2965 | 81..922 | 3970 | 98.6 | Plus |
| sol-RA | 4990 | CG1391-RA | 1510..2363 | 81..922 | 3970 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21354477..21355014 | 397..922 | 2110 | 97.6 | Plus |
| X | 23542271 | X | 21354095..21354413 | 81..399 | 1595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 629..712 | 199..116 | 186 | 69 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..734 | 180..106 | 132 | 64 | Minus |
UFO11715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:44 Download gff for
UFO11715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RE | 2062..2914 | 81..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:47 Download gff for
UFO11715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RC | 1504..2365 | 73..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:31 Download gff for
UFO11715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RA | 1504..2365 | 73..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:31 Download gff for
UFO11715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21354095..21354413 | 81..399 | 100 | -> | Plus |
| X | 21354480..21355014 | 400..922 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:47 Download gff for
UFO11715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21225122..21225440 | 81..399 | 100 | -> | Plus |
| arm_X | 21225507..21226041 | 400..922 | 97 | == | Plus |
