Clone UFO11717 Report

Search the DGRC for UFO11717

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:117
Well:17
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSin-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11717.5prime Sequence

293 bp (209 high quality bases) assembled on 2012-06-28

> UFO11717.5prime
CTGATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGACGAGGACGA
TCCCGTCGTGGAGGAGATTCCCGTATTCCTGTCGAAGAACCTGAGGGACA
GCCTGTATCTCTTTCAATACCCCCACGAAAACGGAGCTCCCCAACCACGA
TGACTCCGTGATTTGTCAATTGTTGTGTAAAACCCAATCGCCCAGGGAGG
GTGGAAGGTGGAACTTTCGGCCCTGGGACATTTGAGTCGGCCC

UFO11717.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Sin-RA 1614 CG10582-RA 65..263 84..293 775 94.8 Plus
Sin-RC 1673 CG10582-RC 155..322 115..293 620 93.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21031979..21032107 115..246 510 97.7 Plus
Blast to na_te.dros performed on 2014-11-28 03:23:29 has no hits.

UFO11717.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:45 Download gff for UFO11717.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 93..291 84..293 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:49 Download gff for UFO11717.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 65..263 84..293 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:33 Download gff for UFO11717.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 65..263 84..293 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:33 Download gff for UFO11717.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21031981..21032146 117..293 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:49 Download gff for UFO11717.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21025081..21025246 117..293 93   Plus