UFO11718.5prime Sequence
1140 bp (1006 high quality bases) assembled on 2012-06-28
> UFO11718.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCCTCACCACTGGTCC
TTTTCACAGCGCTCCTCCTGGTCAGCAGCACAATATGCCAGGGCCTGCCA
GATTTGCACAAACAAATGACGCCGGAGCAGCTGCAGTCAGTCTTCCACGT
GGACACCCACGACGCAGTGCCCCACTATGAGCTCGTGCAGCTCCAGCACC
ACGAGAACAACCACAACCGCCGGCGGCGGAGCATCGGCAAGGGACCAAAG
GTCAACGCCGCCCTGCCGCCCCACCACGTGAAAAAGGATCTCAGCAAGAA
CGCCTACTACAGCGAACTGAAGCACGAGGCTCTCGCCTCGGGCGGCAACC
ACCTGTTCGCCCCGGAAGTGAGTGCCATCAAGTCGCACAACGTCTCGTTC
AGCGCCTTCGGCCAGCACCTGAACCTCTCCCTCCGCGCCACCCAAGGACT
CTTCAAGGGCGCGCCCCACCAGCTGCGCATGTGGACCGTGGGCAGTGAGC
CCAATGCCACCCACGGCCTTGACCTCCAGGAGATTGTCCACGAGCAGCAC
ACCAGCAACGATGTGGGCGAAGTTTTCCAGGACGAGAAGAACATGGCCGC
GATCTTGATGCGGCGCCACATGGAAACCGGCGACCTGATAATGGAGGGCA
GCATTGGACACGACCTGGTGATCAAGCCCTTGCCGCACGAACTGAGTCCC
AATCCGGAGGAGTCGCACCACATCATCTACAAGCGGGAGGCATCCGCAGC
AGAAGGCCAACTGAGTGACTTTGCCTTCATGGAACCTGATGATCTGCTCG
CCAGCGAGAAGCTCGAGCGGTTGCAGCGCCGCCAGCGTCGCAGCAGACGC
AGTGCACCCAGCAGTCCCGATTTCGAGGACCTCAACGACGAGGACGTGCG
CCCTGACGGAGAGCCCAAGTGGCCGAGTCTCGCACCAGATCCGCCGTCAG
GCTCCCTAATATCATCTATCCGAGTCTTGTCATCGTGACTACGATGGCCT
ATCGGCCTCCATGGCGGGAAATCTTGCAAGTCAACGCTAACTTCATCTCA
TTCTGAACGGAGTCGGATTCTGGCCTACGCTACTAAGGTC
UFO11718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RF | 3585 | CG9850-RF | 1052..2093 | 82..1115 | 4765 | 98.1 | Plus |
| CG9850-RE | 4642 | CG9850-RE | 1052..2093 | 82..1115 | 4765 | 98.1 | Plus |
| CG9850-RD | 4388 | CG9850-RD | 1052..2093 | 82..1115 | 4765 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23785912..23786355 | 597..154 | 2220 | 100 | Minus |
| 2R | 25286936 | 2R | 23768205..23768408 | 1022..823 | 745 | 96.6 | Minus |
| 2R | 25286936 | 2R | 23768947..23769077 | 823..693 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 23779015..23779115 | 694..594 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 23791996..23792067 | 153..82 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:23:32 has no hits.
UFO11718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:45 Download gff for
UFO11718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RC | 367..1426 | 74..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:51 Download gff for
UFO11718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RD | 1045..2104 | 74..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:36 Download gff for
UFO11718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RD | 1045..2104 | 74..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:36 Download gff for
UFO11718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23768145..23768407 | 824..1079 | 93 | <- | Minus |
| 2R | 23768947..23769076 | 694..823 | 100 | <- | Minus |
| 2R | 23779016..23779111 | 598..693 | 100 | <- | Minus |
| 2R | 23785912..23786355 | 154..597 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:51 Download gff for
UFO11718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19655668..19655930 | 824..1079 | 93 | <- | Minus |
| arm_2R | 19656470..19656599 | 694..823 | 100 | <- | Minus |
| arm_2R | 19666539..19666634 | 598..693 | 100 | <- | Minus |
| arm_2R | 19673435..19673878 | 154..597 | 100 | <- | Minus |
