UFO11719.5prime Sequence
1099 bp (1018 high quality bases) assembled on 2012-06-28
> UFO11719.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGAAAAGCACCCGAGT
CTGTCCCAGCGGATGGGTACCACTTACCGTCCGAGGAAGGGCCTGAAGTG
TCTGTCATTCGAGTTCCAGTGCCGCCTGCTTCTCCACCATCTGCTGCTAA
CGTCGCTGAGTGGCCGGCATTTCGTATACGCCACTAGTGCCGTCGGGGGG
GCGCTGAGTGCCAACAACTGTCACGACATCCACCACGGATTCGATGTCTA
CCCCAATCTCACGGCCGTATCGCTGGCTCAATCGACGGACACGCCCCTGA
CCGCGACGATGCCACGGTCCGCCTGGAAGTGTTGTTGCTGGAATGCAAGT
AATCAAGCGGAGGAGGTGGAGTGCCGCTGCGAGGGCGATGGACTGAATCG
CGTACCGCAAACCCTGACGCTGCCCATACAGCGTCTAACTATCGCATCGG
CGGGGCTGCCACGCCTACGCCACACGGGGCTGAAGGTCTACGGATCCACG
TTGCTGGATGTGGCCTTCACCGACTGCCTGCAGCTGGAACTGATACAGGA
TGGCGCTTTTGCTAATTTAACCCTATTGCGAACAATCTACATCACCAACG
CACCCAAGCTGACTTTCCTCTCGAAGGACGTATTCCTTGGCATTTCGGAC
ACCGTGGACATTATACGAATCATAAATAGTGGCCTGACCAGAGTTCCTGA
CTTGGGCCACCTGCCACCTCATAATATTCTGCAAATGATAGATCTCGATA
ACAATCAAATCACTCGGATAGACAGTAAATCTATAAAAGTAAAGACTGCC
CAATTAATTTTGACAAACAATGAAATAAGCTACGTTGATGACTCCGCTTT
CTTCGGCTCCAAGATAGCCAAACTATCGCTGAGGAAAACAAAAAAACTGC
AATGATGCATCCCAACGCATTCGATGGCATCATAGACATACTGACTCGAT
TTTCTCCAGCACCTCGTTAGTTGCCTCATTCTGCCGACTTCAGAAACATC
GAGCGTTGTACATTCAGAACACCCCACACTTTTAAAGAACGTTCATTCA
UFO11719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lgr1-RB | 3222 | CG7665-RB | 335..1344 | 82..1088 | 4720 | 98.5 | Plus |
| Lgr1-RA | 3152 | CG7665-RA | 265..1274 | 82..1088 | 4720 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17728382..17728707 | 82..407 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 17729214..17729369 | 407..562 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 17729612..17729689 | 637..714 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 17729457..17729531 | 562..636 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730167..17730241 | 715..789 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730432..17730500 | 856..924 | 345 | 100 | Plus |
| 3R | 32079331 | 3R | 17730303..17730368 | 790..855 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 17730556..17730622 | 925..990 | 225 | 92.5 | Plus |
Blast to na_te.dros performed 2014-11-28 03:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3517..3553 | 214..178 | 113 | 78.4 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7555..7627 | 809..884 | 112 | 63.2 | Plus |
UFO11719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:46 Download gff for
UFO11719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsh-RB | 581..1595 | 76..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:52 Download gff for
UFO11719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 260..1274 | 76..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:37 Download gff for
UFO11719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 260..1274 | 76..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:37 Download gff for
UFO11719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17728371..17728706 | 69..406 | 97 | -> | Plus |
| 3R | 17729214..17729368 | 407..561 | 100 | -> | Plus |
| 3R | 17729457..17729531 | 562..636 | 100 | -> | Plus |
| 3R | 17729612..17729689 | 637..714 | 100 | -> | Plus |
| 3R | 17730167..17730241 | 715..789 | 100 | -> | Plus |
| 3R | 17730303..17730368 | 790..855 | 100 | -> | Plus |
| 3R | 17730432..17730500 | 856..924 | 100 | -> | Plus |
| 3R | 17730556..17730630 | 925..996 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:52 Download gff for
UFO11719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13554093..13554428 | 69..406 | 97 | -> | Plus |
| arm_3R | 13554936..13555090 | 407..561 | 100 | -> | Plus |
| arm_3R | 13555179..13555253 | 562..636 | 100 | -> | Plus |
| arm_3R | 13555334..13555411 | 637..714 | 100 | -> | Plus |
| arm_3R | 13555889..13555963 | 715..789 | 100 | -> | Plus |
| arm_3R | 13556025..13556090 | 790..855 | 100 | -> | Plus |
| arm_3R | 13556154..13556222 | 856..924 | 100 | -> | Plus |
| arm_3R | 13556278..13556352 | 925..996 | 93 | -> | Plus |
