UFO11721.5prime Sequence
1118 bp (1012 high quality bases) assembled on 2012-06-28
> UFO11721.5prime
GGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCA
TACATTATACGAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAA
CGCAAGAAGGCCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCG
TCGCGAGAAGGAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCG
GCGGAGCAGGCATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTG
TCATCGCTGGGCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTC
CGTCAACTCGATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCA
GCCTCCAAGCCACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTC
AACCTAAGCGTCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGAC
ACTGGTCTACACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACG
GCGATGCTCATGCTACGGATTATTATGATGAATACAATCTTAATCCGGGT
TTAGAGTGGGAGGATGAATTCACAGGAGACGACGAAGAGAGCTCACTGCA
GAACCTGGGCAACGGATTCACCTCCAAGCTGCCACCGGGCTATCTCACCC
ACGGCCTGCCCACCGTTAAGGACGTCGCCCCGGCCATCACACCACTCGAG
ATCAAGAAAGGAGACTGAAGTGAAGAAGGAGGTCAACGAGCTGTCCGAGG
AGCAGAAGCAGATGATCATACTGTCGGAGAACTTCCAGCGGTTCGTGGTG
CGTGCCGGCCGCGTCATCGAACGGGCCCTCTCGGAGAATGTGGACATATA
CACGGACTACATCGGCGGCGGCGACAGCGAGGAGGCGAACGACGAGCGAT
CGCATGCGCGGCTCTCGCTGACCGCGTCTTCTACGACGAGCGCTGGTCGA
GACGCTGCATCACCAGCATGGACTGGTCCACCCACTTCCCCGGAGCTGGT
GGTGGGCTCGTACCACACACGAGAGAGTCGACGAGCGGACGGCGTGTGAT
GGGTTGGAACACCAAGTCAAGAAGAGCAGCCCGAGGACGTCTCATTGCCG
AAGGCCGGTGATGTCCAC
UFO11721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RD | 2889 | CG18000-RD | 200..1254 | 77..1118 | 4775 | 97.7 | Plus |
| sw-RL | 3032 | CG18000-RL | 343..1397 | 77..1118 | 4775 | 97.7 | Plus |
| sw-RM | 2873 | CG18000-RM | 347..1401 | 77..1118 | 4775 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20175567..20175855 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20183394..20183682 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20191118..20191406 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20198834..20199122 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20206558..20206846 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20221901..20222189 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20229775..20230063 | 1017..732 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20214219..20214507 | 1017..732 | 1225 | 97.2 | Minus |
| X | 23542271 | X | 20235508..20235663 | 232..77 | 780 | 100 | Minus |
| X | 23542271 | X | 20176238..20176395 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20184060..20184217 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20191789..20191946 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20199505..20199662 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20207229..20207386 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20214885..20215042 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20222567..20222724 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20230441..20230598 | 732..574 | 745 | 99.4 | Minus |
| X | 23542271 | X | 20235288..20235434 | 378..232 | 735 | 100 | Minus |
| X | 23542271 | X | 20234775..20234904 | 506..377 | 650 | 100 | Minus |
| X | 23542271 | X | 20178270..20178399 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 506..377 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20232116..20232165 | 576..527 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:23:42 has no hits.
UFO11721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:47 Download gff for
UFO11721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RE | 381..1435 | 74..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:58 Download gff for
UFO11721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 344..1401 | 74..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:40 Download gff for
UFO11721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 344..1401 | 74..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:40 Download gff for
UFO11721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20235509..20235663 | 77..231 | 100 | == | Minus |
| X | 20229763..20230062 | 733..1026 | 97 | <- | Minus |
| X | 20230441..20230596 | 576..732 | 99 | <- | Minus |
| X | 20232117..20232164 | 528..575 | 100 | <- | Minus |
| X | 20233423..20233443 | 507..527 | 100 | <- | Minus |
| X | 20234775..20234902 | 379..506 | 100 | <- | Minus |
| X | 20235288..20235434 | 232..378 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:58 Download gff for
UFO11721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20105849..20105976 | 379..506 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 232..378 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 77..231 | 100 | == | Minus |
| arm_X | 20100837..20101136 | 733..1026 | 97 | <- | Minus |
| arm_X | 20101515..20101670 | 576..732 | 99 | <- | Minus |
| arm_X | 20103191..20103238 | 528..575 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 507..527 | 100 | <- | Minus |
