UFO11722.5prime Sequence
1151 bp (1008 high quality bases) assembled on 2012-06-28
> UFO11722.5prime
GGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCA
TACATTATACGAAGTTATCAGTCGACATGCCTGCTATTGGAATCGATCTG
GGCACCACCTACTCCTGCGTGGGTGTCTACCAGCATGGCAAGGTTGAGAT
TATCGCCAATGACCAGGGCAACCGCACCACGCCGTCCTACGTGGCTTTCA
CAGACTCGGAACGCCTCATTGGTGATCCGGCCAAGAACCAGGTGGCCATG
AACCCCAGAAACACAGTGTTTGACGCCAAGCGACTCATCGGCCGAAAATA
CGACGATCCCAAAATCGCAGAGGACATGAAGCACTGGCCTTTCAAAGTTG
TAAGCGACGGCGGAAAGCCCAAGATCGGGGTGGAGTATAAGGGTGAGTCC
AAGAGATTTGCTCCCGAGGAGATCAGTTCGATGGTGCTGACCAAGATGAA
GGAGACGGCGGAGGCGTATCTGGGCGAGAGCATCACGGATGCAGTCATCA
CAGTTCCAGCTTACTTCAACGACTCTCAGCGCCAGGCTACCAAAGACGCC
GGTCACATCGCCGGCCTGAATGTGCTCCGCATCATCAATGAGCCCACGGC
GGCAGCATTGGCCTACGGACTGGACAAGAATCTCAAGGATGAGCGCAATG
TGCTTATCTTCGACTTGGGCGGCGGCACCTTCGATGTCTCCATCCTGACC
ATCGACGAGGGATCTCTGTTCGAGGTGCGCTCCACAGCCGGAGACACACA
CTTGGGCGGCGAGGACTTTGACAACCGGCTAGTCACCCACCTGGCGGAGG
AGTTCAAGCGCAAGTACAAGAAGGATCTGCGCTCCAACCCTCGCGCCCTA
CGACGCCTCAGAACAGCAGCTGACGGGCCAGCGCACACTCTCTCTAGCAC
GGAGCACATCGAGATCGACGCATGTTGAGGCCAGACTCTACACAAAGTAG
CCGTGCAGTTGAGAGCTGTGGCGACTCTTCCGCACACCTGCAGCTGTGGA
GAGCCTCACGATGCAGATGACAGGTCGATCCCGAATCTGCTCGTCGCGGA
TCCCTCCATCAAGTGCAAGTTTGCTGCAGATCTTCCAGCAGACCTCACCT
TCCATCACCGAACAGGCATGCTACGACTGCGTGCAGGCCTATCTCACGGA
A
UFO11722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp70Bbb-RA | 2347 | CG5834-RA | 243..1256 | 77..1053 | 4195 | 96.4 | Plus |
| Hsp70Bb-RA | 2347 | CG31359-RA | 243..1256 | 77..1053 | 4165 | 96.2 | Plus |
| Hsp70Bc-RA | 2386 | CG6489-RA | 243..1191 | 77..1002 | 4160 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12502752..12503582 | 77..904 | 4005 | 99.6 | Plus |
| 3R | 32079331 | 3R | 12506035..12506865 | 77..904 | 3975 | 99.4 | Plus |
| 3R | 32079331 | 3R | 12509318..12510148 | 77..904 | 3975 | 99.4 | Plus |
| 3R | 32079331 | 3R | 12466727..12467557 | 904..77 | 3960 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11955472..11956289 | 892..77 | 3585 | 96.5 | Minus |
| 3R | 32079331 | 3R | 11958789..11959606 | 77..892 | 3585 | 96.5 | Plus |
| 3R | 32079331 | 3R | 24056335..24057104 | 846..77 | 1675 | 81.2 | Minus |
| 3R | 32079331 | 3R | 15244372..15245118 | 80..829 | 1225 | 77.9 | Plus |
| 3R | 32079331 | 3R | 13045581..13046163 | 238..820 | 920 | 77.2 | Plus |
| 3L | 28110227 | 3L | 13975966..13976470 | 322..829 | 450 | 73 | Plus |
| 3L | 28110227 | 3L | 13974590..13974767 | 87..264 | 440 | 83.1 | Plus |
| X | 23542271 | X | 11803871..11804160 | 705..413 | 425 | 77.1 | Minus |
| 3R | 32079331 | 3R | 13044979..13045131 | 92..244 | 360 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:23:10 has no hits.
UFO11722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:41 Download gff for
UFO11722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 234..1120 | 68..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:38 Download gff for
UFO11722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 234..1120 | 68..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:24 Download gff for
UFO11722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 234..1120 | 68..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:24 Download gff for
UFO11722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12502743..12503669 | 68..975 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:38 Download gff for
UFO11722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8328465..8329391 | 68..975 | 97 | <- | Plus |
