UFO11725.5prime Sequence
863 bp (670 high quality bases) assembled on 2012-06-28
> UFO11725.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGATTCCATCAGATAT
GGACCTAATTGAATCAACCGCGGAGCAGCCGGACAAACTCTACAACATCA
ACAGAATCCGAGCGTTTAAAGATGTTCCCTTCCTGATAAGGCGCACGGAG
TCCAAGGACACGATCGTGTCATACGCCGATGCTGCAGATGAGATTCAAGT
TTTGATGAATTTTCTGCGAAAGAACGGGGTCCCAGATGAGGCAGGAATTG
CTCTACGAGTCACGGAGCACACGCCGGCCTCTTCTCTTATGATTTTGGCG
ATCCTCAACAACAAGTGCCACTTTTTTCCCACGGATAAGATGATGCTGTC
ACAGGATCTATACTCACAGATGAGCACGGCCGGAGTGGACTACCTCGTGG
CCAACAAACATTTAACCGTTGCACCCTTGTACTTCACATTTCTGGGGAGC
ATCTTGGTGTTTAAGGAGGACTGTAGGCTATACAGGGTAAAGTTGAAATC
CGCTGATGAGACTGTACAATCCAAAAAGCCGTTACCAGCCAATATGTGCT
ACACAATCTCCACGACGGGCACTACAGGTAAGCCAAAGCTCATACATGTG
CCCTATGAATGCATAGCGCCCAACATAGTGGGGCTCACCCAAAAGTTAAA
CGTCTCCATGGCCCGACATCATTACCTTGGCACAACCAAGTACCTTCGAT
CCCTTCGTGGTGGAGGTTCTTCCCAAGCTCTCAAAATGATGCTACTTTAC
TGAACAGTCGTCACTTCCATGAGGACTCGCAAGCAAGTGCTAAGTGCCCT
CTTCCCGACAACT
UFO11725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U26-RD | 3433 | CG13401-RD | 153..932 | 84..862 | 3560 | 97.8 | Plus |
| U26-RC | 3353 | CG13401-RC | 153..932 | 84..862 | 3560 | 97.8 | Plus |
| U26-RA | 3422 | CG13401-RA | 153..932 | 84..862 | 3560 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8448760..8449097 | 687..350 | 1675 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8449158..8449424 | 350..84 | 1335 | 100 | Minus |
| 2L | 23513712 | 2L | 8448539..8448706 | 856..689 | 330 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:23:53 has no hits.
UFO11725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:49 Download gff for
UFO11725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 142..927 | 78..863 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:05 Download gff for
UFO11725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 147..932 | 78..863 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:44 Download gff for
UFO11725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 147..932 | 78..863 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:44 Download gff for
UFO11725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8448530..8448706 | 689..863 | 91 | <- | Minus |
| 2L | 8448759..8449097 | 350..688 | 99 | <- | Minus |
| 2L | 8449159..8449433 | 75..349 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:05 Download gff for
UFO11725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8448530..8448706 | 689..863 | 91 | <- | Minus |
| arm_2L | 8448759..8449097 | 350..688 | 99 | <- | Minus |
| arm_2L | 8449159..8449433 | 75..349 | 98 | <- | Minus |
