UFO11726.5prime Sequence
1027 bp (903 high quality bases) assembled on 2012-06-28
> UFO11726.5prime
GAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCAT
ACATTATACGAAGTTATCAGTCGACATGACGGAGCACCAGGCCGAGGAGC
AGGCGGACACGCCGCCCACCAAGGTCAAGGCCACGCCCACACCCACCCCG
AGTGGAAAGTTCAAGGACGCGAAGGAAGACGCCTTCCTGTCCACATCGCC
GGACAGCGCCAACGGCGATGCCCAACACAAGCTGCCAGCGGACCAGCTGG
CCATGTCCTCCAGTGCGCATCCCCAGCAGGCGGGCCAAGCCCGCCCGCTC
ATCCTGCAAGCCTTCCACCGCTGCTCCTCGCCAGAACAGTGCGTCACGCT
GCACGACATCCTGGACTCCTTTAAGGCGCCGCTCTCCGAGGACCAGGCCT
GGGCCCTGATCCACCAGTTCGCCGGGCTCTACCACCAGGTGGCCGTACAA
GCGCACACCTGTGCCGCGGACTACGAGGCCGCCCTGCCCACCGGATTCGA
GCTGCACTTCCATCGCGACGGCAGCGTCCACTTCTCCGGCCCGGATCAGC
TGACGCCTAAGGAGCAACTGCAGCAGGAGCAGATCCCCCTCCCCCCGCAG
CACGACGTGATTGTGGATCAGCCGGACCACAGCGCCAGCAGCAGCGGCGA
CAGCAGCGTCATCAACAGAGCGTTCGACAACAGCAATCACCACCACCACC
ATCAACATCATCACCCGCCGCTCGTCGTCTCGCATAGAAGATTATCAGCG
AACTGGCGGAAATCGTCTACACCGCCTTGGATTACAATCTGCCGGAGGAC
GAGGAGTGCCAAGTGTCACAGGAGCTGGAGAATCTTGTTCACTTTATGAC
GGCAGATGAGACAGACGACGATTGCATTGACGAGGCATCGACGAGGGCGA
CAGCGCTGGGACGACGATCCGGAGGAGGACGCCACGATACCAAGACTAGA
GCAATATCGAGACCTGCAAATCACTAAACCACCCTGCCTGAAACACTATA
AGAGCTGTCTGCAGCCTCGGACGGAAA
UFO11726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RH | 2182 | CG10076-RH | 602..1554 | 76..1014 | 4285 | 97.8 | Plus |
| spir-RG | 2669 | CG10076-RG | 602..1554 | 76..1014 | 4285 | 97.8 | Plus |
| spir-RF | 4875 | CG10076-RF | 602..1554 | 76..1014 | 4285 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20311820..20312414 | 76..670 | 2975 | 100 | Plus |
| 2L | 23513712 | 2L | 20334079..20334198 | 739..858 | 540 | 96.7 | Plus |
| 2L | 23513712 | 2L | 20322008..20322078 | 669..739 | 355 | 100 | Plus |
| 2L | 23513712 | 2L | 20334620..20334708 | 858..943 | 235 | 92.1 | Plus |
Blast to na_te.dros performed 2014-11-28 03:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2847 | 637..721 | 134 | 63.5 | Plus |
UFO11726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:50 Download gff for
UFO11726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RD | 598..1568 | 68..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:07 Download gff for
UFO11726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RF | 598..1568 | 68..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:47 Download gff for
UFO11726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RF | 598..1568 | 68..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:47 Download gff for
UFO11726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20311816..20312414 | 68..670 | 99 | -> | Plus |
| 2L | 20322010..20322080 | 671..740 | 98 | -> | Plus |
| 2L | 20334081..20334198 | 741..858 | 98 | -> | Plus |
| 2L | 20334621..20334681 | 859..917 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:07 Download gff for
UFO11726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20311816..20312414 | 68..670 | 99 | -> | Plus |
| arm_2L | 20322010..20322080 | 671..740 | 98 | -> | Plus |
| arm_2L | 20334081..20334198 | 741..858 | 98 | -> | Plus |
| arm_2L | 20334621..20334681 | 859..917 | 96 | == | Plus |
