UFO11727.5prime Sequence
1176 bp (1078 high quality bases) assembled on 2012-06-28
> UFO11727.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCACAGACAT
TGGAGGCAGTGCAATCGGTAACGGAAATGGCCCCAGTGGCCACAACAGTG
GCAATGGTCATGTCCTAGTCAGCGGACTTCACTCGAGCGACTCCTCCAGC
GGAATTGGCAGTGCGAGCAGTGAGAAGTTGGCAACGCGCAGCGACGAGAC
CCATGCCCAAAGGCGGAGCAGTGGCGAAGGGGATGCTGACGAGGATGCGG
ATGATGACGATGACGATGAGGATGAAGATGAGGATGATGGGGATGAAACT
ACGGCGGAGTCCCCTTTGCTGCCCCTGAAGGAAGACGAGCCATCGCCCCC
TCAAGTCCACAGTTCCTCGCACATATCAGCCAGTAGGTCACCCCACTTCG
GCACCTCAGCTGGTGACCTCGAGCCAAAGCACCTCCCATTAGCACCGAAC
TCCCCGTCCAACGAGCAGGCCAAGTGCGAGGGTCCGGAAGGAGAGGCCAA
CAACAACAACAGCACCAGCAGCAACCACAATCACAATCCCAACCACATTC
GCACCCATAGGCGCCAGCACGAGTATCAGCTCTATCCCAACGACACCTTC
GCTCAACTGGAGGGAAAGGCCCCCAAGCCGAACACCAAGATGCAGACCAA
AGTGGATGCGGTGGGCCAGATCACGGGTCCGTGGGGAAAGTGGCAGCTGC
GAACGGTGCTACTGATCTTCCTGTGCAAGATTCCATCGTCCTGGTTTATG
GCCTGCATCATTTTCACGGCCCCAGCACCCAGGCACGGCGAGTTCTTCTG
CAAGCCCCCCCACACAATCGGAGCCCAGAACCAAACGCAATGGATCAAGG
TCTCGCATCCGCAGAAGGAGGAGAGCGACGATCAGGAGTTTAGCATTGAC
TTCTGCAATGTCTACCAGGATGCACAGGAGCACGCCCATCACTATTACAC
TACGAGAACAGTGACCAGGAGCGCGGCGTGTGGGGAGAAACCTCTGCACG
CAACTCAACGTATTCCTTGCACCGAGTTCAGCACGAGTCGACTACCACTC
GGTGGTCACGCAGTACGACTGTCTGCTCCGGACATTCTCGTATCCGTCAC
TCAGTCTCCACCTCTTTGGCGTGTTC
UFO11727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44098-RC | 3925 | CG44098-RC | 284..1381 | 87..1173 | 5145 | 98.6 | Plus |
| CG44098-RE | 4187 | CG44098-RE | 546..1643 | 87..1173 | 5145 | 98.6 | Plus |
| CG44098-RD | 3830 | CG44098-RD | 455..1286 | 353..1173 | 3815 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4757581..4758412 | 1173..353 | 3560 | 98 | Minus |
| 3R | 32079331 | 3R | 4767978..4768245 | 354..87 | 1340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2487 | 548..650 | 147 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1614 | 542..643 | 143 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2477 | 548..691 | 142 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6824 | 548..630 | 142 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6914 | 472..630 | 139 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6812 | 547..630 | 134 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2397 | 548..630 | 132 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6881 | 548..650 | 132 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6863 | 548..647 | 130 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1577 | 546..586 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2947..3008 | 549..607 | 123 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1160 | 549..647 | 123 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1626 | 548..607 | 121 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2520 | 548..647 | 119 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1153 | 548..586 | 114 | 76.9 | Plus |
UFO11727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:51 Download gff for
UFO11727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31530-RA | 151..987 | 350..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:10 Download gff for
UFO11727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RC | 284..1384 | 87..1176 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:48 Download gff for
UFO11727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RE | 546..1646 | 87..1176 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:48 Download gff for
UFO11727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4767979..4768245 | 87..353 | 100 | == | Minus |
| 3R | 4757578..4758411 | 354..1176 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:10 Download gff for
UFO11727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 583300..584133 | 354..1176 | 98 | <- | Minus |
| arm_3R | 593701..593967 | 87..353 | 100 | == | Minus |
