UFO11728.5prime Sequence
573 bp (488 high quality bases) assembled on 2012-06-28
> UFO11728.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGGACGACACACAGCACT
TCTGCCTGCGCTGGAACAACTACCAGAGCAGCATAACCTCGGCGTTCGAG
AATCTGCGCGACGACGAGGCCTTCGTGGATGTGACCCTCGCCTGCGAGGG
ACGCAGCATCAAGGCACACCGCGTCGTCCTCTCCGCCTGCAGTCCCTACT
TCCGCGAGCTGCTCAAGAGCACACCCTGCAAACACCCGGTCATACTGCTG
CAGGATGTCAACTTCATGGACCTGCACGCCCTGGTGGAGTTCATCTACCA
CGGCGAGGTCAACGTGCACCAGAAGTCCCTGCAGTCCTTCCTTAAGACCG
CCGAAGTGCTGCGCGTCTCTGGACTCACGCAGCAGCAGGCAGAGGGACCA
CACACCAGCCCATCTGGCTCAGAATACAGAAAACCTGGGCCAATTTCCCG
GGCGGGCCCGCAACGCCCGCTTCAAACAACGCAACAACCCAATTCGGCTC
CCCAAATTCCCGCACCCTATGGG
UFO11728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 4368 | CG11491-RO | 975..1385 | 77..495 | 1890 | 97.9 | Plus |
| br-RN | 4546 | CG11491-RN | 970..1380 | 77..495 | 1890 | 97.9 | Plus |
| br-RM | 4213 | CG11491-RM | 637..1047 | 77..495 | 1890 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1624517..1624707 | 77..267 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1635830..1636009 | 266..445 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 1173641..1173841 | 365..165 | 180 | 72.6 | Minus |
| 2L | 23513712 | 2L | 11235882..11236016 | 154..288 | 180 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:24:05 has no hits.
UFO11728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:51 Download gff for
UFO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RK | 841..1257 | 74..501 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:12 Download gff for
UFO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1051 | 74..501 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:51 Download gff for
UFO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1051 | 74..501 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:51 Download gff for
UFO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1624515..1624707 | 74..267 | 98 | -> | Plus |
| X | 1635832..1636020 | 268..460 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:12 Download gff for
UFO11728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1518548..1518740 | 74..267 | 98 | -> | Plus |
| arm_X | 1529865..1530053 | 268..460 | 97 | -> | Plus |
