Clone UFO11729 Report

Search the DGRC for UFO11729

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:117
Well:29
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRor-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11729.5prime Sequence

1097 bp (938 high quality bases) assembled on 2012-06-28

> UFO11729.5prime
GAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCAT
ACATTATACGAAGTTATCAGTCGACATGAACAAATACTCGGCATTTATAG
TCTGCATTTCGCTCGTGCTTTTATTTACAAAAAAGGATGTGGGGAGCCAT
AATGTGGACTCAAGAATATATGGTTTCCAGCAATCATCAGGTATTTGCCA
TATTTACAATGGCACCATTTGTCGCGATGTCTTGAGCAATGCCCATGTTT
TCGTATCCCCCAATCTCACCATGAACGATTTGGAGGAGCGATTAAAGGCA
GCTTATGGAGTAATCAAGGAATCCAAGGATATGAACGCAAATTGCCGCAT
GTACGCTTTGCCCAGCTTGTGTTTCAGTTCAATGCCAATTTGCCGGACTC
CAGAGCGCACGAATCTCTTGTACTTCGCCAACGTGGCCACAAATGCCAAG
CAACTGAAGAACGTCAGCATTCGACGGAAGAGAACCAAGTCCAAGGACAT
TAAGAACATAAGCATATTCAAGAAGAAGTCCACCATCTACGAGGATGTGT
TCAGCACAGACATATCGAGTAAATACCCACCAACCAGAGAGTCTGAGAAC
CTAAAACGCATTTGCCGCGAAGAGTGCGAACTTCTGGAGAACGAGCTGTG
CCAGAAGGAATATGCCATTGCCAAAGCGACATCCCGTCATCGGGATGGTG
GGTGTGGAGGATTGCCAAAAGTTGCCGCAGCACAAGGACTGCCTATCCTT
GGGCATCACCATCGAGGTGGATAAGACGGAGAATTGTTACTGGGAAGGAT
GGATCGACATATAGAGGAGTGCCAACGTCTCCGCATCCGGAAAGCCATGT
TTGCGATGGTCATGGCTGATGAAGAAATCTCCGATTTCCCTGAACTCATC
GGTCAGATTAGTGCAGAATCCTGAAGCGTTGAGATAGTCCTTGTGTTTGT
GACTCTCACGTGAACGCATATCGAACTTTGTGATATCAAATGTGCGGACA
AATATGGATTGCATTGTCGACGACTGCAGCCATATCTAATATCATACTAT
ATTTGCGATATACTTTCAAAGAGAACATCTGCACTATGGATGAGAAT

UFO11729.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ror-RA 2271 CG4926-RA 125..1165 76..1090 4450 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10252484..10253064 327..907 2715 99.3 Plus
2L 23513712 2L 10252274..10252428 173..327 775 100 Plus
2L 23513712 2L 10251967..10252064 76..173 490 100 Plus
Blast to na_te.dros performed 2014-11-28 03:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 505..586 995..915 119 63.9 Minus

UFO11729.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:52 Download gff for UFO11729.5prime
Subject Subject Range Query Range Percent Splice Strand
Ror-RA 121..1155 64..1077 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:13 Download gff for UFO11729.5prime
Subject Subject Range Query Range Percent Splice Strand
Ror-RA 116..1150 64..1077 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:52 Download gff for UFO11729.5prime
Subject Subject Range Query Range Percent Splice Strand
Ror-RA 116..1150 64..1077 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:52 Download gff for UFO11729.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10251967..10252064 76..173 100 -> Plus
2L 10252275..10252427 174..326 100 -> Plus
2L 10252484..10253074 327..916 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:13 Download gff for UFO11729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10251967..10252064 76..173 100 -> Plus
arm_2L 10252275..10252427 174..326 100 -> Plus
arm_2L 10252484..10253074 327..916 98 -> Plus