UFO11730.5prime Sequence
1126 bp (1026 high quality bases) assembled on 2012-06-28
> UFO11730.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGGTACAACAAAGGAG
CGAAGAGAGCAAAGCGAGGGCGACGCCGCCACCACCCACTTAACAACAAC
AGCAACAGCAACAACAGGAGCAATAGTAGCAGCAGGAGTTACTACTACGC
TGCCAGCTACAAAAACAACAACCACAGCGGCAGACACGAGCACGACGAAT
GCCGCCAAAAAGATTCGCCGCACCTTCTCCATGCCACGCAATCCCTTCCG
CTGGACGCGTAAGTTCAAAACGGCAGTGGCCGTTACGTCGTCCGCGGGAG
CGGAAAACGATAACGAAAGCGGCAAGAATAACGGGGCCAGGGAGCGGCGT
GGCAGCCACACGGCGATCTCGTCCTGCGTGGGAGGTGGGCGTGGCAGGAG
CGGGAGCATTGTGTCGCTCAGCAGCTACGAGGCCCCATTCATTTCGTCCA
CCAACAACAACACAACCACCGCCAGCAATGGAAACAACAACAACAGTAGC
AGTAGCAACATCAACAGCAAGCGGACACGTGCTCTGCGCCGTTCGTCCTT
CAGGAAGTTTCTCAACCGGATCGCCCAGCACCTGAGCTCAACGGTTAATG
TCGTGTCGGAGGAGAAGCACTCGCCTGCGAATCGCATCGCCTTCATTGAA
ATTGTGCCATTCTACACCGGATGCTGGCGCAGAAAAGAGGCGAACAAACA
TGGTCAGCCATCGGTTTCGGGCTCTTCGTCGGGCGGCGGAGGAGGAGCAG
GAGGACCAGGCGGCGGGGAGAGAGTGCCCCCCATCGGAGGCTATCAGTGG
CCCGGCGGATCAGACTCCAGGTGTAATGGGATTGAAGAACCACGGGAACA
CTTGCTTTATGAACGCGGGTGCTGCAATGCCTCAGTCACACAGACATACT
GGCCGAGTACTTTGTTTTAGATCAGTACAAGGCTGACCTCAAGCGACGCA
ACAGATTAACTCGCGAAAGTTCGGCACTAGGAGAGCTCACCGGAGCAGCT
GGCCAACGGTGCTGAGCGCTGGGGACTGCAGACGAGAGTGATCACGCACC
AGCTTAGGCATGGTAAATCGTACGGA
UFO11730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30421-RA | 5225 | CG30421-RA | 518..1571 | 82..1126 | 4865 | 98.2 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 518..1091 | 82..655 | 2870 | 100 | Plus |
| CG30421-RB | 5141 | CG30421-RB | 518..1091 | 82..655 | 2870 | 100 | Plus |
| CG30421-RC | 4550 | CG30421-RC | 1091..1487 | 739..1126 | 1580 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24744266..24744839 | 82..655 | 2870 | 100 | Plus |
| 2R | 25286936 | 2R | 24752669..24752911 | 738..982 | 1125 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24751299..24751384 | 655..740 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 24752964..24753044 | 980..1058 | 245 | 95.1 | Plus |
Blast to na_te.dros performed 2014-11-28 03:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2812 | 89..569 | 245 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2463 | 142..274 | 228 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1163 | 94..231 | 228 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6939 | 90..257 | 223 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6879 | 99..232 | 217 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6864 | 129..281 | 213 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6890 | 130..274 | 210 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6909 | 89..242 | 205 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6865 | 96..233 | 199 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1157 | 141..246 | 192 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2428 | 142..232 | 185 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2932 | 113..260 | 184 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6842 | 144..274 | 176 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1605 | 121..221 | 170 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6820..6915 | 89..184 | 155 | 66.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9819..10005 | 25..215 | 151 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2571..2659 | 97..184 | 145 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2989 | 145..545 | 144 | 53.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1179 | 142..221 | 140 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1546..1587 | 142..183 | 138 | 81 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2908 | 113..262 | 137 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2549 | 142..242 | 136 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2891 | 129..248 | 133 | 59.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3379 | 142..221 | 133 | 67 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5692 | 133..186 | 132 | 74.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7095..7147 | 133..186 | 132 | 74.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..7998 | 128..187 | 113 | 68.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9442 | 128..187 | 113 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2896..2980 | 96..184 | 111 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 142..183 | 111 | 73.8 | Plus |
UFO11730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:53 Download gff for
UFO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 452..1501 | 75..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:15 Download gff for
UFO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 515..1564 | 75..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:54 Download gff for
UFO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30421-RA | 515..1564 | 75..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:54 Download gff for
UFO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24744263..24744839 | 75..655 | 99 | -> | Plus |
| 2R | 24751300..24751383 | 656..739 | 100 | -> | Plus |
| 2R | 24752671..24752910 | 740..981 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:15 Download gff for
UFO11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20631786..20632362 | 75..655 | 99 | -> | Plus |
| arm_2R | 20638823..20638906 | 656..739 | 100 | -> | Plus |
| arm_2R | 20640194..20640433 | 740..981 | 99 | -> | Plus |
