UFO11733.5prime Sequence
1107 bp (998 high quality bases) assembled on 2012-06-28
> UFO11733.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGAAATGCTGGCACAAT
GTGGTGAGGCGCAGAAGGAAGAAGCCGACGGCAGCGGCGGCGGCGAAAGG
ATCAAAGGGGTCGCATGGAGGCGTGGCAAGTCCTCGAGATGAAGATGCCA
TCTGCCAGCGGCAGCAACAAGTGGATACCTACACTTGGCTAACAACACAA
GCTGTCCCTCTGCTGTGGCTGCACTTGTTGCTCCTTGTCGCATTTGCAAA
ACATGCGGCTGCAGCCACAACAATTGCCACAAATCCCGAGGCCACCACAA
CAACGGTGAGCAACTACACGGTGACGACCACGGCACTATCATCATCCACG
ACAACCACTTCATCGGGATCAGCTCCAGCTTTATCATCTGCGGCGGATAA
GTTCGCCGGCAACTGGGCCAACTTGGAGGATTCGTTCCGGAATATCGTGC
GGATTGGTGATGGGAACACGGTGACACGGACGTCCATTGAACAATCGCTG
GTGACGATACACGACATTGCCACCGAGAACTTGGGGACATTGTGCATCTC
GACCCTATATCGCCCCCTACAAGTGCCCATCAACTCGGAACGATATGAGA
GCTCTAGACAGAAAACCGATTTGGCCGCCTCGATACTCCAGGAAGTGGGC
ATCATTCGGCACGGCGGACTGTCGGATGCTTTAGCCAAAGGCCTGCTAAC
CGATGACTTTATAACTGGAGCCCGCATTTTGGCCCTGAATCTAACGAATG
GAGCGGTCCAGTCCTACGTCTGGTGGGTCAAGGGAACAGCGGCGGAATCC
AGCGGTACGACGAGGACGGACTGCAGATTGGCAAAAAGCCCGCTGGCAGT
TATCCCTGATTCGACGATGAAACATCTCACCCACTTGCGTTCGCCCAAAT
CGCGCCCAGTCCGCCACACTACTACAAGGCTGTGACTATCCCTACTCTCG
TGCTCGCAGAGCGCTGCTGAGTTCTACAGCATGCATTCGCGAATGGGCGC
CATGGTAGGCTTCATCAGCATCGAATTGGATGTGTCCACGCTGCGGTAAC
AATGCGA
UFO11733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31760-RD | 4647 | CG31760-RD | 239..1290 | 83..1107 | 4530 | 96.9 | Plus |
| CG31760-RC | 4411 | CG31760-RC | 294..1345 | 83..1107 | 4530 | 96.9 | Plus |
| CG31760-RB | 4389 | CG31760-RB | 272..1323 | 83..1107 | 4530 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12153528..12153974 | 83..529 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 12155471..12155659 | 529..717 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 12160689..12160882 | 716..908 | 920 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:24:22 has no hits.
UFO11733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:54 Download gff for
UFO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 263..1318 | 75..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:20 Download gff for
UFO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 267..1322 | 75..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:57 Download gff for
UFO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 267..1322 | 75..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:57 Download gff for
UFO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12153522..12153974 | 73..529 | 98 | -> | Plus |
| 2L | 12155472..12155658 | 530..716 | 100 | -> | Plus |
| 2L | 12160690..12160882 | 717..908 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:20 Download gff for
UFO11733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12153522..12153974 | 73..529 | 98 | -> | Plus |
| arm_2L | 12155472..12155658 | 530..716 | 100 | -> | Plus |
| arm_2L | 12160690..12160882 | 717..908 | 99 | -> | Plus |
