UFO11734.5prime Sequence
1084 bp (986 high quality bases) assembled on 2012-06-28
> UFO11734.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGAGTTCGGAATCTGGCC
AACAAGACGTTGAATCGAAGCCAAAATCGGCTCGGAGTACCAGTGCTGGT
CACGAATACGAGGATGTGCTTCAGATTATTGGATTCGGGCGAGTGCAATG
GATCGTCCTTTTTGCCGCAGGACTTCTCCTGATGATGGTCATAAACGAGA
CCATGGGCATGTCCTATATTACCATAGTATCCCAGTGCGATTTTGAGATG
AACTCAATGGATAAGGCGGTCATGAGTGCTGCCAGTTTTATCGGCATATT
CTGTTCATCATACTTTTGGGGCTACCTGAGTGACACTATAGGTCGCAGAC
CAGTGCTAATCTATACGACGATCGCCGGGAATTTCTTATCCTTATGCTCC
ACCGTCATTCCGAACTACTGGCTTTATGTGTTCATTCGTTTCGGTGTTGG
ATTTTTCATTGCGGGAGCATCATCAACAACCTATGCGTATCTTGGGGAAT
TCTTCACTCCCCGTCATCGACCAATCGCCATTAATTACGCCAGTCTCTTC
GTGGGTGTGTCCACTGTCTATGTTCCAGCTACCGCCTGGCTAATACTTTC
GATGGACTGGAGTGTCAGTATAACCGATGGCTTCTCCTTACGTCCTTGGA
GACTGCTGACCATATGCTACTTGCTGCCTGGTGTCGTGGGCACATTGATG
TTGTGGTCGCTTCCCGAGAGTCCCAAGATCCTAATGTCCTTGCACAAAAC
TGAAGAGGCTTTTGCGGCAGTCGATTGGATTGCAGTGACGAATTCGGGCA
AACACTTACACGAATTCAAGTGCATAAACTAAAAACGGAGATAACGCGAA
TGGGGAAAATATACTGCTCATATCCAAGTCAGCGTTTACAACAATCAGAA
AATGTGGAAGAAACTTTGCCGCTGCTAAGAAGACCTCACTGCTGAACTCG
TCATCAGCTGTACGATTAGTTGTGGTCTATTTTTCAGTTCTTCGCATGGA
TCTTGCATCGAATCAATCGATGGCTCAATGGCGC
UFO11734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31106-RB | 1676 | CG31106-RB | 69..1049 | 82..1054 | 4670 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25217389..25217699 | 627..935 | 1455 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25216532..25216695 | 181..344 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 25216781..25216944 | 343..506 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 25217212..25217333 | 507..628 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 25216365..25216465 | 82..182 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 25217761..25217868 | 934..1037 | 310 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:23:46 has no hits.
UFO11734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:48 Download gff for
UFO11734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 62..1047 | 77..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:00 Download gff for
UFO11734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 64..1049 | 77..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:42 Download gff for
UFO11734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 64..1049 | 77..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:42 Download gff for
UFO11734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25216360..25216464 | 77..181 | 98 | -> | Plus |
| 3R | 25216533..25216694 | 182..343 | 100 | -> | Plus |
| 3R | 25216782..25216944 | 344..506 | 100 | -> | Plus |
| 3R | 25217212..25217333 | 507..628 | 100 | -> | Plus |
| 3R | 25217391..25217697 | 629..933 | 99 | -> | Plus |
| 3R | 25217761..25217868 | 934..1037 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:00 Download gff for
UFO11734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21042504..21042666 | 344..506 | 100 | -> | Plus |
| arm_3R | 21042934..21043055 | 507..628 | 100 | -> | Plus |
| arm_3R | 21043113..21043419 | 629..933 | 99 | -> | Plus |
| arm_3R | 21043483..21043590 | 934..1037 | 94 | | Plus |
| arm_3R | 21042082..21042186 | 77..181 | 98 | -> | Plus |
| arm_3R | 21042255..21042416 | 182..343 | 100 | -> | Plus |
