UFO11735.5prime Sequence
1147 bp (983 high quality bases) assembled on 2012-06-28
> UFO11735.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGGGAACACGATTGTATT
ACCGCCGATCCGGCGGTCAGTTAACAGATCCGATAATTGAGAAGCTAGCC
GCTCGTTTTGAGCGTTCACTGGTGATTACGGATGAGCCGCTAAACAACAC
ATACATCGAGAGTCCGCCGGAGTCTTCCGATCGCGAGGTTTCACCCAAAC
TCGTCGTGGGCACCAAGAAATACGGTCGCCGGTCTAGGCCACAGCAGGGA
ATCTACGAGTTATCCGTCACGGACTCGGACAATACGGACGAGGACCAGTT
GCAGCAGCAGCAAAATCAGCGAAGCCTCAACGGATGCGATGAGCTGGGAG
TTCAGGTGCAACGTTCCTCGTCCCAGAGCGATCTTCCTGGCAGCCGGCGT
CTGCGGTCCGTCCACACCAGCGGGAGCAAACTGAAGCGTTGTGCTTCACT
GCCAGCACGCCGGAAGATGAACAGCAACACCACGGGAGCCACTACATCAC
CGACGGCAGCGGCCAAGTTGAAACAGCTTTCCATCCAGAGCCAGGCGCAG
CACAGCAGCAGCGTGGAATCACTGGACACCGTGACGCCGCAGCAATTGGA
GACGATCTCAGTGCATAGCATTATGGAAGCCTGGGAGCTGGCCAGCATTC
CCAACACTCGCAACCTACTTCACGTCCTGGATTCGATGAGGAGGAGGAGG
TGAACCTGCAGCAGCTAACTAAGGCATTGGAGGAGGAGCTGCGGGGCATC
GATGGGGATCACGAGCAATCGAATATGTTGCGCGCTCTGGCTGCTCTGCA
GCCACCGAGTTGGGCAACTACAGACTTGCCTATAGGCAGCAGCATGAGGA
GAACCTCAAGCTGAGGGCCGATAATAACGCGCCAACAAAGGGTGGCTTTG
CTTGCGTGAAGTGGATGAGCGGCATGCGTCGCTGGAGAATAACTCAAGAA
GCAGGTGCAGCAGCTGGAGCAAAGAAACGCCAGCATGGGTGCGTGAAATA
ACGCCTGCGGATGACTATGACCGCGATCCACTGAACCAAGCATGAACAGA
AAGCTGAGCCACGCTAAATCGCTGGAACAGGAAGAATCCCTCTGAAA
UFO11735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RD | 2514 | CG14025-RD | 17..1088 | 82..1145 | 4800 | 97.4 | Plus |
| Bsg25D-RC | 4065 | CG14025-RC | 17..1088 | 82..1145 | 4800 | 97.4 | Plus |
| Bsg25D-RE | 4549 | CG14025-RE | 613..1608 | 158..1145 | 4420 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5275322..5275781 | 1078..625 | 1775 | 96.3 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 408..160 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 625..403 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 5277247..5277325 | 160..82 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:23:49 has no hits.
UFO11735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:49 Download gff for
UFO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RD | 9..1031 | 77..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:02 Download gff for
UFO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RC | 12..1034 | 77..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:44 Download gff for
UFO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RC | 12..1034 | 77..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:44 Download gff for
UFO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5276936..5277180 | 161..405 | 100 | <- | Minus |
| 2L | 5277247..5277330 | 77..160 | 97 | | Minus |
| 2L | 5275307..5275780 | 626..1095 | 96 | <- | Minus |
| 2L | 5276512..5276731 | 406..625 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:02 Download gff for
UFO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5275307..5275780 | 626..1095 | 96 | <- | Minus |
| arm_2L | 5276512..5276731 | 406..625 | 100 | <- | Minus |
| arm_2L | 5276936..5277180 | 161..405 | 100 | <- | Minus |
| arm_2L | 5277247..5277330 | 77..160 | 97 | | Minus |
