UFO11739.5prime Sequence
1092 bp (983 high quality bases) assembled on 2012-06-28
> UFO11739.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTTATCTGCGCTCCG
GCTAATCTTCCTGGGCGCTCTGCTCGGCGCCTCTGTTTGCGCCTCCCCCA
TTGAGTTCGTAATGGACACCAGCCTAAATGGCTCTCGATCTGATCCTGCG
ACTGCAACCCACCCTGGCAAATGGCCACCGACGACCAAAGCGCCGGCGCT
CAGGGCTCCAGCTGGAACAGCTGGACATGCTTATCAGTCGCCATCGTCGT
CGCTGGCCGCTGATAACAGAAGCCACGACAACAACAACGCTAGCGCCGTG
TCCATGCTGCTGCCGCAAGACGGCGACGCATCTGGAGCTGTGGCCCCTGC
TGTTACTCCCCAGCTGCCCATCTACATTGCTCAGCCTAGCGCGAAAAAGC
CAGAAAACAAGATAAAATGCCACTGTGACACGTGCAAGGAATCGAACAAT
ATATGTGAAACGGACGGCTTTTGTTTCACGTCCGTGGAGAAGAACTCTGA
TGGGAGCATCATCTTCAGCTACAGATGCATAACAGACCAGTTGCCACCTG
AAGATCCTACCTCGTGCAAGTTAAATTCGGAAGCGGGCTCTTCTCAGTGC
TGCGCCGAAGATTTTTGCAATACGCGTGAGAATTACAGTGGTGTCCTACC
AGATTATGTGCCACACCGACTGACCAGCTGGGAGTTTGTGGCTATCATCC
TAGGGGCCACCCTCTTCATTTGCTTCACGGGCACCAGTACGTGGTATTAT
TGCCAGCGTCGCAAGCGAATGGCTAGCGGAAGGACGTTTGCCAAGGAGGA
TTCGGCGTACGATCCTATTTGAATGGTAATACACCATACCACGACATCAT
TGAGATGACCACCTCTGGTTCGGGTTCGGCTGGTCTTCCGCTGCTGTGCA
GCGTCCATGCCCGACAGGTGCAGCTGTGCCACGTATCGAATGGACGTTCC
GGCGAGGTCTGGCTGGACGCCTGCAGGCAAACGTGGCGGTCAGATCTTCC
TAGTCCGAGGGATGTTCTGCTCGTGAGGCGATCTATCGAACT
UFO11739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babo-RC | 4758 | CG8224-RC | 632..1631 | 82..1067 | 4535 | 97.8 | Plus |
| babo-RA | 4776 | CG8224-RA | 632..1130 | 82..580 | 2480 | 99.8 | Plus |
| babo-RB | 4839 | CG8224-RB | 632..1127 | 82..577 | 2480 | 100 | Plus |
| babo-RA | 4776 | CG8224-RA | 1268..1649 | 700..1067 | 1445 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8953102..8953417 | 141..456 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 8959103..8959334 | 699..929 | 1035 | 97.4 | Plus |
| 2R | 25286936 | 2R | 8957027..8957156 | 573..702 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 8954734..8954851 | 457..574 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 8952970..8953029 | 82..141 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:24:39 has no hits.
UFO11739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:57 Download gff for
UFO11739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 623..1629 | 74..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:27 Download gff for
UFO11739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 625..1631 | 74..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:03 Download gff for
UFO11739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 625..1631 | 74..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:03 Download gff for
UFO11739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8959107..8959334 | 703..929 | 98 | -> | Plus |
| 2R | 8952963..8953029 | 74..141 | 95 | -> | Plus |
| 2R | 8953103..8953417 | 142..456 | 100 | -> | Plus |
| 2R | 8954734..8954851 | 457..574 | 100 | -> | Plus |
| 2R | 8957029..8957156 | 575..702 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:27 Download gff for
UFO11739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4844534..4844661 | 575..702 | 100 | -> | Plus |
| arm_2R | 4840468..4840534 | 74..141 | 95 | -> | Plus |
| arm_2R | 4840608..4840922 | 142..456 | 100 | -> | Plus |
| arm_2R | 4842239..4842356 | 457..574 | 100 | -> | Plus |
| arm_2R | 4846612..4846839 | 703..929 | 98 | -> | Plus |
