UFO11740.5prime Sequence
1131 bp (1028 high quality bases) assembled on 2012-06-28
> UFO11740.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCGACTGAAATCGA
CGATTTGATTGAAAAGCTGAAGACGACCAGTGTCAGTCCGGCGAACACGA
CCAACTTGCTCTGCGAGATCTCGGCGACGAAGGACCCCAAACTTTTCGAT
AAGCACGAGCTGGCAGAGTGCTTTCTGGGCCTCACCAAGTGCGACGACAC
AAACGTGCGCAAGGAGGCGGCCAAGTGCATTGCGGAGATCACCAAGTCCG
AGGTGCAGCGCAAGAAGTTCACCAAGAGGAATATAATAGCCGCATTTCTG
GAGTGCTTGCGACAAGTGCCCACGTCCGACGGCAGTATGGAGCTGCCCAT
ACAGATTTGTCGGGCACTGGGCAATATCTGCTACCTAAACGACGAAGCCA
GGGACTTAATACTCGAGCTGGAGGGCGATGCTGTTCTACTGCGACTGCTG
GACATCACAACCATCGAGGACGTGGCCAATGCGGCGCAATTCATCAAAGT
GCGCGGCGGCTTGCTGTCCAACTATTTGCTCGGAGGCGAGGGCTTGGCCA
AGCGGGCCATGGAGTTGGGCGTGATGAAGAAGCTGCAAGGCATCATCGAC
ATTGGCGCCTCCAATGTGGAACAGCATGAGGATCTGCTGCTGAACACGCT
TCCACTGCTCAGTATACTCACCGAGAACGTGTCGGATCTGAACTTCGACT
CTTCCCTGAATATCCAGCTGTCTCGCATTCTGGCCGCTTCCACGAATCCC
GATCTTGCCGAGATGTGCCTGGAGCTGCTCCATTACCAGGCGGAGAGCGA
CGAAGTCAGCTTATTTTGGCCAAGACGGTCTGTGCGAAACCATCTACAAC
CTGCTGGAAAGTACAGACTCTGGCCAGCACAAGTGAGGCCAGGGCGTTGA
TGAACTCGCCTGCGAACTCATCGTATTATCCTTACTGGTGATGACTCAAT
GCACTATTTGTACACCACGCCGCTGCTGAGACATGGTCGATTGGCTGGAA
CTCGACCGACATCGATCTGCTGCACGGGCGTGCTGACCCTGGCACTTTGC
CGCACCGATTAGCCACTGCATCTACTTTGTG
UFO11740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RB | 3467 | CG3572-RB | 293..1353 | 82..1131 | 4890 | 98.2 | Plus |
| vimar-RC | 3470 | CG3572-RC | 293..1356 | 82..1131 | 4850 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977692..6978597 | 990..91 | 4230 | 99.3 | Minus |
| 2R | 25286936 | 2R | 6977457..6977603 | 1131..990 | 310 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:24:42 has no hits.
UFO11740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:57 Download gff for
UFO11740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 290..1350 | 82..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:30 Download gff for
UFO11740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 293..1353 | 82..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:05 Download gff for
UFO11740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 293..1353 | 82..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:05 Download gff for
UFO11740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6977457..6977602 | 991..1131 | 91 | <- | Minus |
| 2R | 6977692..6978597 | 91..990 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:30 Download gff for
UFO11740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2864962..2865107 | 991..1131 | 91 | <- | Minus |
| arm_2R | 2865197..2866102 | 91..990 | 99 | == | Minus |
