UFO11741.5prime Sequence
871 bp (260 high quality bases) assembled on 2012-06-28
> UFO11741.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAATCCACATGGGCTCGTTCGCTATCC
CCCACCCCCGCTTATGTCGTGTCGTGTCGTTGTCTCTCTCTCTCTCTCGT
ACTCGCTCAAAGCCTGTCACCCACTTTTCTGCACCCGCTCGCCGGCTTTG
GCGCGGCCTTAAAACCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGA
AGACTCCCCGGTACACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCG
GCGCAGTACAAGGATGTGATCGAGAACAAGCGCACGGACGCGGAGACCAA
CCGCAAGAAGGACGAGGTGTGGCTGCAGATCGCCAAGGAGTTCTACTCGC
GGGTCTACCACCGGCGCAACGCCCAGCAGCTGCTCCAGCTTTACAAGAAC
ATGAAGCTGCTGCTCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCA
TTCGTTCATGGACCTGCTCAACACGCTGTCTCACCAGGAGTCCGTGGCCC
AGTACATTGCCGAGCAACTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGC
GGCGGTAAACGAGGCGGCGCGTGACTCGGAGGCTTATACGGACACCAATC
GGACGACTACGACGACTCACACATGCCCCACTACCACGAGGGCATGGACA
CTGACGTGATCCTTATCAAGTCGGAGACAATTATCGACAACGATCAGACA
GACAATGCCATGGACTGCCTGCACGACGACTATGACGACGACTGCTTGAG
CCACAATGGACCTGAGGTGTGTCGCGAAGAGGACGACGACGTGCTCTTTC
CAACTGACGAGCGCCAACTGC
UFO11741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RJ | 3254 | CG32813-RJ | 96..885 | 82..871 | 3335 | 94.8 | Plus |
| CG32813-RB | 3438 | CG32813-RB | 409..1069 | 211..871 | 2705 | 93.9 | Plus |
| CG32813-RK | 4058 | CG32813-RK | 1034..1689 | 216..871 | 2695 | 94.1 | Plus |
| CG32813-RB | 3438 | CG32813-RB | 96..229 | 82..215 | 640 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1389601..1390053 | 216..668 | 2010 | 96.2 | Plus |
| X | 23542271 | X | 1390276..1390474 | 673..871 | 710 | 90.5 | Plus |
| X | 23542271 | X | 1388663..1388796 | 82..215 | 640 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:24:46 has no hits.
UFO11741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:58 Download gff for
UFO11741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RC | 94..883 | 82..871 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:32 Download gff for
UFO11741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RJ | 96..885 | 82..871 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:07 Download gff for
UFO11741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RJ | 96..885 | 82..871 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:07 Download gff for
UFO11741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1388663..1388796 | 82..215 | 98 | -> | Plus |
| X | 1389601..1390057 | 216..672 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:32 Download gff for
UFO11741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1282696..1282829 | 82..215 | 98 | -> | Plus |
| arm_X | 1283634..1284090 | 216..672 | 95 | -> | Plus |
