UFO11742.5prime Sequence
1025 bp (930 high quality bases) assembled on 2012-06-28
> UFO11742.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGTCACGATCACCTCA
CCTCTGTGGCCGGCCGATCTCCTCGAAAAGTGCGCCCAAGGACGTGCCGC
CTGGTTGGAGCGGGGTCGACGCTGCAGCGTCCAGGATCAGCAACAGCAGC
AGGCCACCTGCCACCGACGCTGGGTGAAGCGCAACCGAATCCAAGACGCC
TCTTTGGGCGGCTCATCGGACGATGAGGATTTCCTGGGCGTTCTGCGGGG
TCCTAGCACCTTTGCGAATGCCTTTCTCTACGTGGGCCTGGGCACGGTGG
CACTGGGACTCGTCATCGCGTTCGTTGGCACCGGCGAGAAGGGCTTCAAA
ACCACGGAACTAAGACTTATAGGCCCCTCTCTCATAGGATTGGGCCTGAT
CTGTTGCATTTTACGCATCCTCTTCTGCATCTGTCCATCGCACTGCATTT
CATCTAGCAAAAAGACGCGGAAGAAAAACGGCAACAAGATTGATGCAGAT
CACACGACATCGTTGCTCAGAAACGAGAGCAAAAGAGTATCTATAGCGAG
AGGTCCTAGTTTTCAGCCCAAATATCCCATAGCGCACAAACGCAGCCAGA
GCAAAATGCTCAACGAGGGAATGGAGGCACTGCGTCAGATAGCCACCACA
TCCTTGTTCATGCAGAACGAGCAGAAGACGGCCATCAATCGCGTGGTGCC
GATCATCAATGAGCCGGAAAGCGGTGATGCTCCACTGGAGATGAGAAGCT
GCAGACGGCTCTGAATGCCTGCGAGATGAGTGACGATGAGCAGATCAGGA
CCAGGATCAGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGATTGCCAAACG
TACACAGCACACTGCCGTTACGAGTAGTACCACAAGACCCACATCACAGC
AGCCACATCGAAGATACGAGAGCCACTACCCTGGCACGTGACGAAAGGCG
ACGCAGCTGGTGCTTCAGCGATTGA
UFO11742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42784-RC | 3621 | CG42784-RC | 459..1414 | 83..1020 | 4315 | 97.8 | Plus |
CG42784-RF | 6640 | CG42784-RF | 3524..4433 | 129..1020 | 4085 | 97.7 | Plus |
CG42784-RI | 5345 | CG42784-RI | 2230..3138 | 130..1020 | 4080 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13497239..13497438 | 239..438 | 1000 | 100 | Plus |
2L | 23513712 | 2L | 13497500..13497680 | 436..616 | 905 | 100 | Plus |
2L | 23513712 | 2L | 13497739..13497900 | 615..776 | 810 | 100 | Plus |
2L | 23513712 | 2L | 13496543..13496698 | 83..238 | 780 | 100 | Plus |
2L | 23513712 | 2L | 13497958..13498176 | 776..983 | 570 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:24:49 has no hits.
UFO11742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:59 Download gff for
UFO11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42784-RC | 459..1389 | 83..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:34 Download gff for
UFO11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42784-RC | 459..1389 | 83..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:09 Download gff for
UFO11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42784-RC | 459..1389 | 83..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:09 Download gff for
UFO11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13497502..13497680 | 438..616 | 100 | -> | Plus |
2L | 13497741..13497900 | 617..776 | 100 | -> | Plus |
2L | 13497959..13498195 | 777..999 | 93 | | Plus |
2L | 13496543..13496698 | 83..238 | 100 | -> | Plus |
2L | 13497239..13497437 | 239..437 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:34 Download gff for
UFO11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13496543..13496698 | 83..238 | 100 | -> | Plus |
arm_2L | 13497239..13497437 | 239..437 | 100 | -> | Plus |
arm_2L | 13497502..13497680 | 438..616 | 100 | -> | Plus |
arm_2L | 13497741..13497900 | 617..776 | 100 | -> | Plus |
arm_2L | 13497959..13498195 | 777..999 | 93 | | Plus |