Clone UFO11742 Report

Search the DGRC for UFO11742

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:117
Well:42
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG42784-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11742.5prime Sequence

1025 bp (930 high quality bases) assembled on 2012-06-28

> UFO11742.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGTCACGATCACCTCA
CCTCTGTGGCCGGCCGATCTCCTCGAAAAGTGCGCCCAAGGACGTGCCGC
CTGGTTGGAGCGGGGTCGACGCTGCAGCGTCCAGGATCAGCAACAGCAGC
AGGCCACCTGCCACCGACGCTGGGTGAAGCGCAACCGAATCCAAGACGCC
TCTTTGGGCGGCTCATCGGACGATGAGGATTTCCTGGGCGTTCTGCGGGG
TCCTAGCACCTTTGCGAATGCCTTTCTCTACGTGGGCCTGGGCACGGTGG
CACTGGGACTCGTCATCGCGTTCGTTGGCACCGGCGAGAAGGGCTTCAAA
ACCACGGAACTAAGACTTATAGGCCCCTCTCTCATAGGATTGGGCCTGAT
CTGTTGCATTTTACGCATCCTCTTCTGCATCTGTCCATCGCACTGCATTT
CATCTAGCAAAAAGACGCGGAAGAAAAACGGCAACAAGATTGATGCAGAT
CACACGACATCGTTGCTCAGAAACGAGAGCAAAAGAGTATCTATAGCGAG
AGGTCCTAGTTTTCAGCCCAAATATCCCATAGCGCACAAACGCAGCCAGA
GCAAAATGCTCAACGAGGGAATGGAGGCACTGCGTCAGATAGCCACCACA
TCCTTGTTCATGCAGAACGAGCAGAAGACGGCCATCAATCGCGTGGTGCC
GATCATCAATGAGCCGGAAAGCGGTGATGCTCCACTGGAGATGAGAAGCT
GCAGACGGCTCTGAATGCCTGCGAGATGAGTGACGATGAGCAGATCAGGA
CCAGGATCAGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGATTGCCAAACG
TACACAGCACACTGCCGTTACGAGTAGTACCACAAGACCCACATCACAGC
AGCCACATCGAAGATACGAGAGCCACTACCCTGGCACGTGACGAAAGGCG
ACGCAGCTGGTGCTTCAGCGATTGA

UFO11742.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42784-RC 3621 CG42784-RC 459..1414 83..1020 4315 97.8 Plus
CG42784-RF 6640 CG42784-RF 3524..4433 129..1020 4085 97.7 Plus
CG42784-RI 5345 CG42784-RI 2230..3138 130..1020 4080 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13497239..13497438 239..438 1000 100 Plus
2L 23513712 2L 13497500..13497680 436..616 905 100 Plus
2L 23513712 2L 13497739..13497900 615..776 810 100 Plus
2L 23513712 2L 13496543..13496698 83..238 780 100 Plus
2L 23513712 2L 13497958..13498176 776..983 570 93.6 Plus
Blast to na_te.dros performed on 2014-11-28 03:24:49 has no hits.

UFO11742.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:59 Download gff for UFO11742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 459..1389 83..999 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:34 Download gff for UFO11742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 459..1389 83..999 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:09 Download gff for UFO11742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 459..1389 83..999 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:09 Download gff for UFO11742.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13497502..13497680 438..616 100 -> Plus
2L 13497741..13497900 617..776 100 -> Plus
2L 13497959..13498195 777..999 93   Plus
2L 13496543..13496698 83..238 100 -> Plus
2L 13497239..13497437 239..437 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:34 Download gff for UFO11742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13496543..13496698 83..238 100 -> Plus
arm_2L 13497239..13497437 239..437 100 -> Plus
arm_2L 13497502..13497680 438..616 100 -> Plus
arm_2L 13497741..13497900 617..776 100 -> Plus
arm_2L 13497959..13498195 777..999 93   Plus