UFO11743.5prime Sequence
1124 bp (1023 high quality bases) assembled on 2012-06-28
> UFO11743.5prime
AATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCATA
CATTATACGAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACG
CAAGAAGGCCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTC
GCGAGAAGGAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGC
GGAGCAGGCATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTC
ATCGCTGGGCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCG
TCAACTCGATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGC
CTCCAAGCCACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAA
CCTAAGCGTCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACAC
TGGTCTACACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGC
GATGGATATATGGAGGACTGGTGGCGTCCACGTAAAGCTCATGCTACGGA
TTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGGAGGATGAAT
TCACAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGATTCACC
TCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTTAAGGA
CGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAAGGAGACTGAAGTG
AAGAAAGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATGATCATACT
GTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGTCATCGAAC
GGGCCCTCTCGGAGAATGTGGACATATACACGGACTACATCGGCGGCGGC
GACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTCTCGCTGAC
CGCGTCTCTACGACGAGCGCTGGTCGAAGACCGCTGCATCACCAGTATGG
ACTGGTCCACCCACTTCCCCGAGCTGGGTGGGTGGGCTCGTACCACAACA
ACGGAGGAGAAGTCGACGAGTCGGACGCGTGGTGATGGGTGTGGTACACC
AGTTCAGAAAAGACACGCCGAGAC
UFO11743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RK | 2756 | CG18000-RK | 200..1245 | 75..1119 | 4815 | 98.1 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 659..1275 | 504..1119 | 2670 | 96.8 | Plus |
| sw-RE | 3070 | CG18000-RE | 813..1396 | 537..1119 | 2505 | 96.6 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 200..629 | 75..504 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20175561..20175855 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20183388..20183682 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20191112..20191406 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20198828..20199122 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20206552..20206846 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20221895..20222189 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20229769..20230063 | 1053..760 | 1240 | 97.6 | Minus |
| X | 23542271 | X | 20214213..20214507 | 1053..760 | 1225 | 97.3 | Minus |
| X | 23542271 | X | 20235508..20235663 | 230..75 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 376..230 | 735 | 100 | Minus |
| X | 23542271 | X | 20176238..20176392 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20184060..20184214 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20191789..20191943 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20199505..20199659 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20207229..20207383 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20214885..20215039 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20222567..20222721 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20230441..20230595 | 760..605 | 715 | 98.7 | Minus |
| X | 23542271 | X | 20234774..20234904 | 505..375 | 655 | 100 | Minus |
| X | 23542271 | X | 20178269..20178399 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20186144..20186274 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20193874..20194004 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20201590..20201720 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20209260..20209390 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20216916..20217046 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20224651..20224781 | 505..375 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20232117..20232165 | 606..558 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:24:54 has no hits.
UFO11743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:59 Download gff for
UFO11743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 381..1422 | 72..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:37 Download gff for
UFO11743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 197..1238 | 72..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:11 Download gff for
UFO11743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 197..1238 | 72..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:11 Download gff for
UFO11743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20229743..20230062 | 761..1077 | 95 | <- | Minus |
| X | 20230441..20230593 | 607..760 | 98 | <- | Minus |
| X | 20232117..20232164 | 559..606 | 100 | <- | Minus |
| X | 20233423..20233443 | 538..558 | 100 | <- | Minus |
| X | 20234328..20234360 | 505..537 | 100 | <- | Minus |
| X | 20234775..20234902 | 377..504 | 100 | <- | Minus |
| X | 20235288..20235434 | 230..376 | 100 | <- | Minus |
| X | 20235509..20235663 | 75..229 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:37 Download gff for
UFO11743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20100817..20101136 | 761..1077 | 95 | <- | Minus |
| arm_X | 20101515..20101667 | 607..760 | 98 | <- | Minus |
| arm_X | 20103191..20103238 | 559..606 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 538..558 | 100 | <- | Minus |
| arm_X | 20105402..20105434 | 505..537 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 377..504 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 230..376 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 75..229 | 100 | == | Minus |
