UFO11745.5prime Sequence
1130 bp (1011 high quality bases) assembled on 2012-06-28
> UFO11745.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGAAAAGAATG
AGTACATCGAATTACCTTGGACCATGAACTCCTCCAGCGGCGATGACGAG
GCGCCGAAGGATCCGCGCACTGGCGGCGAGGATTTTACGCAACAATTTAC
AGAGAATGATTTCGAGGGACATCGGGCCCACACCGTTTATGTGGGCGTCC
ATGTGCCAGGAGGACGACGCCACTCGCAGCGCCGCCGCAAGCATCACCAC
AGTGGCCCCGGAGGTGGTGGCGGTGGCGGAGGTGGAGGCGGCTCCATCGG
CGGATCCGGAAGTGTGGGCGGTGGTGCGGGCAAGGACAACGTCAGCGAGA
AGCAACAGGAAGTGGAGCGACCAGTGACTCCGCCGGCACAGCGAGTTCAA
TTCATACTTGGCGAGGATGTGGACGATGGCACACACGTATCGCATCCCCT
GTTTTCGGAAATGGGGATGCTGGTCAAGGAGGGCGACGAGATCGAGTGGA
AGGAGACAGCGCGATGGATCAAATTCGAGGAGGATGTGGAGGAGGGTGGC
AATCGATGGTCGAAGCCGCACGTGGCCACGCTCTCCCTGCACTCCCTGTT
CGAGCTGCGTCGCCTGCTGGTCAATGGCAGCGTGATGCTGGACATGGAGG
CCCAAAATCTGGAGGTGATGGCCGATCTCGTGTGCGATCACATGGTCAGT
GCGGGAACATTGCCGCCCGGTGTAAAGGATAAAGGTCAAGGACGCGCTCC
TGCGACGACATCGGCATCAGCACGAGTATGCCAAAAAGACGCGACTGCCA
ATTATTCGATCCCTGGCCGATATGCGCAATCACTCGTCATCAAAAAAGAA
AAAATCTAATTCTAAACACTCGCGACCCGCACAAAACCTGTCATCGATCA
CAGAGGACATGGTCAGAGTCCCAGTATCAGTCGATGGCCAGGCCAGGAGG
CGGACGGAACTCAGCGAGCAGCAGCACACGGGCAACACCCACTTCATGGA
GGGAAAGATACGCCGGGGCGCGGAGGCAGCACATTCTCGGGGGCGAGGTG
ATTTCTGGAGCGCACCTGTTCTGTTCATTC
UFO11745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RC | 4517 | CG31906-RA | 294..1338 | 85..1125 | 4835 | 98.2 | Plus |
| Ndae1-RB | 4046 | CG42253-RB | 294..1338 | 85..1125 | 4835 | 98.2 | Plus |
| Ndae1-RE | 4563 | CG42253-RE | 516..1531 | 114..1125 | 4690 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7234527..7234999 | 896..423 | 2320 | 99.8 | Minus |
| 2L | 23513712 | 2L | 7236145..7236352 | 424..217 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 7231029..7231183 | 1048..897 | 580 | 96.1 | Minus |
| 2L | 23513712 | 2L | 7237686..7237790 | 218..114 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 9780810..9780930 | 543..663 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:02 has no hits.
UFO11745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:00 Download gff for
UFO11745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RC | 288..1340 | 79..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:41 Download gff for
UFO11745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 291..1343 | 79..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:16 Download gff for
UFO11745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 291..1343 | 79..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:16 Download gff for
UFO11745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7230944..7231183 | 897..1130 | 91 | <- | Minus |
| 2L | 7234527..7234997 | 425..896 | 99 | <- | Minus |
| 2L | 7236145..7236351 | 218..424 | 100 | <- | Minus |
| 2L | 7237687..7237790 | 114..217 | 100 | <- | Minus |
| 2L | 7240182..7240210 | 85..113 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:41 Download gff for
UFO11745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7230944..7231183 | 897..1130 | 91 | <- | Minus |
| arm_2L | 7234527..7234997 | 425..896 | 99 | <- | Minus |
| arm_2L | 7236145..7236351 | 218..424 | 100 | <- | Minus |
| arm_2L | 7237687..7237790 | 114..217 | 100 | <- | Minus |
| arm_2L | 7240182..7240210 | 85..113 | 100 | == | Minus |
