UFO11746.5prime Sequence
1063 bp (956 high quality bases) assembled on 2012-06-28
> UFO11746.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCAAAATTGTTAGAGA
AACACTTGCCGAAAAAGCCCGTGAAAATGGACGAAACGAAGGATATGCGC
TATAGTTTGGAGATCGACGAGGATTTGAGGAGACCCTTGGAGGCGCGGGC
CAAGAAAGTTCTGGCCGTTAATTCTGCCAGTCAAAGGACTGTTAATCTCG
GCGAGGATACTATGTACGAGGCAGGTGACTTGGAGCACTTGGACGATGGC
GATGATAGCTTCAGTGCCTTTGAGCGCATGTGCGACAAAACCGGTTCCGA
TCCGGATAGCACTCTTTTCCAGTACCTGCACAGCGAGGACCGGAGTCAGG
TGATGGCCAGGGCTAGGGATCATAGCACCGACGATCAGAAAGAGATCGAT
GCACTGCGTCGCATGCTAGAGGCAGTGGGTACAGAAGACGATCTATTGGA
GAACGAAAGTCCCGTCAAGGGGGCGGAGTGCACTCACCTGGAGGACATTG
AGGCGCCGTCGCGCTTTTGGGACAACACCCTGGCCGGAATGGACGAGACC
TCATCCGACTCTGGGCTGACTCCTAAAGCATTGACCAAGGTTTCGCCTGT
CAAAATGGTGGGGCTGCTTCGCCCCTCAACCATCATCGAAGACAGCGAAC
TGGAGTCGTCTGATGTGTCTTCACACACAAGCTTCCAAAGCGCTCGCACC
CTAAAGACAAATGCATCTAGTTCTTACGAAACAGCCACGGATACTTCCCT
CAGTGGAACGCTCCTAAACGTCGACGAATTGTTTTACGCCGCAATTGCCA
AGGCCAAGCCACCAGGAATGTCCAAGGAGAGAGCTGGAGCTCTTAGCGAT
CTTCATGCAGTCTTAGAGAGCTGGCCTCACTTCGTGATGAGTCGAGAGGA
GAGACGATAAGAGATACATAATCGAGCTATCCTCTCTGACGATGAGAACT
GCAGCTAGTCCAGGAGGTAACAGGAGACCCGTTCCGTGTGTCCTCAGTCA
CGAAAGATCAACT
UFO11746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RC | 2019 | CG9188-RC | 21..1022 | 81..1060 | 4360 | 97 | Plus |
| sip2-RD | 2021 | CG9188-RD | 44..1024 | 102..1060 | 4255 | 96.9 | Plus |
| sip2-RE | 2040 | CG9188-RE | 66..1043 | 105..1060 | 4240 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6962722..6963554 | 933..105 | 3965 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:24:26 has no hits.
UFO11746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:02:55 Download gff for
UFO11746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 21..1026 | 81..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:22 Download gff for
UFO11746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 21..1026 | 81..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:59 Download gff for
UFO11746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 21..1026 | 81..1063 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:59 Download gff for
UFO11746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6962573..6963554 | 105..1063 | 96 | <- | Minus |
| 2L | 6963633..6963659 | 78..104 | 92 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:22 Download gff for
UFO11746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6962573..6963554 | 105..1063 | 96 | <- | Minus |
| arm_2L | 6963633..6963659 | 78..104 | 92 | -> | Minus |
