UFO11750.5prime Sequence
1094 bp (978 high quality bases) assembled on 2012-06-28
> UFO11750.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGTATCCCTGGAGCTCCTC
CTCGTACGGCGGCCAGATTCCCAGTGCCGCCAACGTCCGGACCATGCCGA
ATGGTTTGGATGACCAGGAGAAGCTGCTCGCTGAAGCCATTGGACTAGCG
AGGAAGCAGGCCTTTCAAATGAACCACTTTCTGGATAAGGAGCGTATGCT
GGACTCGCTCAAGTGCGCCAGCACCATGCTGGGCGAGCTGCGGACCTCCG
TCCTTTCCCCCAAAAGTTACTACGAGCTGTACATGGCCGTCACCAACGAA
CTGTGCCACCTGGAGCTGTACCTCAGCGAGAAAATCGACAAGAAAACGGA
TTTGTACGAGCTCGTTCAGTACTCGCATACTATTGTGCCGCGGTTGTACC
TCCTCATAACAGTGGGCATTGTGTATATCAAGAATGACCCTACGCTGAAG
CGCAGCATTCTAAAGGACCTGGTCGAGATGTGCCGCGGTGTCCAGCATCC
GTTGCGAGGCCTCTTTCTGCGCAACTACCTGCTGCAGTGCACCCGGAACA
TCCTGCCCGATGTGATGGTTGAGGAGAACGAGCACGAGGGCAATGTCTAT
GATGCCATCGACTTCGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTG
GGTCCGCATGCAGCACCAGGGACACTCCAGCGAAAAGACGCGTCGCGAGA
AAGGAGCGTGAGGAACTAAAGATCCTGGTAGCACTAATCTGGTGCGGTTG
TCCCAGCTGGAGTCGGCCACTCTGGAATCTACCAGCGACTCATTCTACCC
GGCATCCTGAGCAGTGTCAGCTGTCGCGATGCAATTGCACAGAGTACCTA
ATGGAGTGCATCATCCAGTGTTCCCCGACGAGTTCCACCTAAAGACACTT
GACCCCTTCCTAAGTCCTGCGCTCAGCTGAGACCGTGTAATGTGAGAACA
TCATATATCGTATCGACGATGCTGCCTATACCAGCGATGGCCAGACAAGT
GGTAATGCATCGATGCATCTAACCCGCGAGGGTGAACTGTTTGG
UFO11750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps35-RB | 3369 | CG5625-RB | 289..1325 | 80..1093 | 4520 | 97.1 | Plus |
| Vps35-RA | 3015 | CG5625-RA | 123..1099 | 140..1093 | 4220 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22186768..22187423 | 331..979 | 2855 | 98.5 | Plus |
| 2R | 25286936 | 2R | 22186516..22186706 | 140..330 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 22186260..22186320 | 80..140 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:09 has no hits.
UFO11750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:01 Download gff for
UFO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 280..1307 | 75..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:46 Download gff for
UFO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 286..1313 | 75..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:19 Download gff for
UFO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 286..1313 | 75..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:19 Download gff for
UFO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22186257..22186320 | 75..140 | 96 | -> | Plus |
| 2R | 22186517..22186706 | 141..330 | 100 | -> | Plus |
| 2R | 22186768..22187423 | 331..979 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:46 Download gff for
UFO11750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18073762..18073825 | 75..140 | 96 | -> | Plus |
| arm_2R | 18074022..18074211 | 141..330 | 100 | -> | Plus |
| arm_2R | 18074273..18074928 | 331..979 | 98 | == | Plus |
