UFO11752.5prime Sequence
1088 bp (957 high quality bases) assembled on 2012-06-28
> UFO11752.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCGCCACCATC
GAGTTCGAGGAGTGCCTGAAGGATTCTCCCAGATTCAGACAATTTGTTTC
CAAGGAGGAGAGCGACATCGAGCACTTGGAGCAGCGCTTGGAGAAAATCA
TCAAGCTGTGCAATGTGGCCGTGGACTCGGGCAAGGAGTATGTCAAGAAC
CAGAGCGCCTTTGCCATGTCCCTGTGGGATCTACAACAGCACTTTCTCGA
CAATAAGAACGCGCACAATGCGCTGGGCAAGCTGATTCACTGCTTCCAGG
AGATGAACAAGTTCCACACCATACTCTTGGATCAGGCTAGCCGCACGGTG
CTTAAAAATCTCAGTGTGTTCGTGAAGGACGACATTAACCAGGTGAAGGA
CTATAAGGGACATTTTCTCAAGGTTTCCGAAGGCTATGACAATGCGCTGA
TTAAAAACGCTCAGGCCAGCAAAAACCGACCGCAGGAGATGCAGGAGGCT
GCCAATATCCTTTCTGCCTCGAAATCGTGCTTCCAACACACCGCTCTGGA
TTATGTCAACTATATAACGCTAGCGCAGGCTCGCAAGGTCCCCTCAATAC
TATCCACGCTGTTGGATTACTATCAGGCGTGCGTGACCTATTACCACCAG
GGCTTCGATCTGTGCAACGACTTCGACGAGTTCTTTAAGAATATCAGCGA
GGATTTGAACGCTTTGCGCGGTGACTATCAGCAGCTGGAGAAGCCATGCA
GAATCGCCATATGAGCGTTAATCGCTACTGCGACTCGAACACCAATAGCA
CGTCCAACAAGATCGAGGGCTACCTATTCAGAGAAGTCCAAGGGCTTCAG
ACCTGTGCCGACGATGGTTCTACCTCAGCGACACCAGCTCGTATATAGAA
ACGCAGCACGAGGACTCGTCTCGGTCATGAGAGATCTGCGCATCTGCAGC
GTGCGCCGGTAACGAAGGTGACCGCCGTTCTGCTTCAAGGTCATCTCGCG
ACAATTCTCCATTCTTGCAGCTGACTCGCTGAACTGCC
UFO11752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-RA | 3464 | CG6742-RA | 390..1405 | 86..1082 | 4500 | 97.5 | Plus |
| CenB1A-RB | 2565 | CG6742-RB | 41..506 | 657..1082 | 1435 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23121336..23121632 | 658..948 | 1205 | 97.6 | Plus |
| 3R | 32079331 | 3R | 23120611..23120782 | 344..515 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 23120839..23120985 | 512..658 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 23120264..23120383 | 136..255 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23120459..23120555 | 254..350 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23118789..23118841 | 86..138 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:15 has no hits.
UFO11752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:03 Download gff for
UFO11752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenB1A-RC | 387..1384 | 86..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:48 Download gff for
UFO11752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1387 | 86..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:22 Download gff for
UFO11752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1387 | 86..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:22 Download gff for
UFO11752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23120461..23120554 | 256..349 | 100 | -> | Plus |
| 3R | 23120617..23120781 | 350..514 | 100 | -> | Plus |
| 3R | 23120842..23120985 | 515..658 | 100 | -> | Plus |
| 3R | 23121337..23121632 | 659..948 | 97 | -> | Plus |
| 3R | 23118789..23118841 | 86..138 | 100 | -> | Plus |
| 3R | 23120267..23120383 | 139..255 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:48 Download gff for
UFO11752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18944511..18944563 | 86..138 | 100 | -> | Plus |
| arm_3R | 18945989..18946105 | 139..255 | 100 | -> | Plus |
| arm_3R | 18946183..18946276 | 256..349 | 100 | -> | Plus |
| arm_3R | 18946339..18946503 | 350..514 | 100 | -> | Plus |
| arm_3R | 18946564..18946707 | 515..658 | 100 | -> | Plus |
| arm_3R | 18947059..18947354 | 659..948 | 97 | -> | Plus |
