UFO11756.5prime Sequence
1090 bp (989 high quality bases) assembled on 2012-06-28
> UFO11756.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCGCAGACAGCAGTCC
TACCGTTTCGAGGACAACGAGTCCACGTCTTACGCTCTGAGGATGAATCG
TCGCTTTTCGAGAGTGGAGTCCGGGGCGGACCTTAAGGATTATTTCGATC
GGGGTGATATCGCTTCCCGGGAGAACCGCTGGAACTTCGAGGTGGCATGG
GAGGTGGCCAACAAGGTGGGCGGTATTTACACGGTGATCCGGTCGAAGGC
ATATGTCTCCACCGAGGAGATGGGCGAGCAGTTGTGTATGATGGGTCCCT
ACAAGGAGCACTGTGCCCGCACCGAGATGGAGGAGATGGAGTTCCCCAGG
GGAAACCCCCTACTAGACGCTGTCAACTCATTGCGCTCGCGAGGCTATAA
AATCCACACCGGTCGCTGGCTGGTGGACGGAAATCCTCAATTAATCCTGT
TCGATATTGGATCAGCCGCTTGGAAGCTGGATCAGTTCAAATCGGAGATG
TGGGAGAAGTGCCATATTGGAATACCTCATTTGGATATCGAGACGAACGA
TGCCATTATCCTTGGCTTTATGATTGCCGAGTTCCTGGAGGAGTTCCGCA
ACTTTGCCGTGACTTATTCGCAGAACAACGAATTGAGCGCTCCGAGGATT
GTCGCCCACTTCCACGAATGGCAAGCTGGCGTGGGTCTCATTGTCCTACG
TACTCGTCTGGTGGAGATCGCCACTGTGTTCACTACCCACGCCACATTGT
TGGGTCGTTACTTGTGCGCCGGCAACACCGATTTCTACAACAATCTGGAC
AAGTTCGCCGTGGACGAAGAGGCGGGCAAGCGCCAAATCTATCATCGTTA
TTGCCTGAGCGAGTGCCACCCACTTGGCTCATGTGTTCACCACCGTCTCC
GAGATTACGGCTACGAGGCAGAGCATCTGCTCAGCGCAAACCGAAATCAT
CACGCCCATGGACTGAACGTGAGGAGTTCTCGGCCATCCACGAGTTCAGA
CTGCACGCCGATGCCAGGAAAGATCAACGGAATCCTGCGG
UFO11756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RA | 2584 | CG6904-RA | 95..1114 | 83..1090 | 4710 | 98.2 | Plus |
| GlyS-RD | 2473 | CG6904-RD | 43..1003 | 142..1090 | 4415 | 98.1 | Plus |
| GlyS-RC | 2487 | CG6904-RC | 57..1017 | 142..1090 | 4415 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15144328..15145240 | 1047..142 | 4185 | 99 | Minus |
| 3R | 32079331 | 3R | 15145318..15145377 | 142..83 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:25:25 has no hits.
UFO11756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:05 Download gff for
UFO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-RA | 186..1193 | 72..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:56 Download gff for
UFO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 85..1092 | 72..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:28 Download gff for
UFO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 85..1092 | 72..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:28 Download gff for
UFO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15144313..15145239 | 143..1059 | 98 | <- | Minus |
| 3R | 15145318..15145377 | 83..142 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:56 Download gff for
UFO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10970035..10970961 | 143..1059 | 98 | <- | Minus |
| arm_3R | 10971040..10971099 | 83..142 | 100 | == | Minus |
