UFO11757.5prime Sequence
1091 bp (982 high quality bases) assembled on 2012-06-28
> UFO11757.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGGTAATGCACAGGGA
CAGAACGGCTTCGAGGAACTCCGGCGATATGTGAAGCAGGGCGGTGATTT
TAGCAAGGAGCTCATCTTTGTCCTGCAGGAGAGAGCCGATTCGGAGCTGA
TCTACTCCAAGTCGCTATCGAAACTGGCCAACAAGCTGAACAAAGCGGGC
AGGGAAATTCCCGGGAGCGTGGCCGACGCCTGGCGTGGAGTGGCTACGGA
GATGGAGAGCCGCAGCGACATCCATCGCCAGTTGGCAGCCTCGCTAACGG
ATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAAGGACATCACAAGGCG
CGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGCGCGAGTACTGGGCGA
ATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCCCATACGGCGGCGC
GCGAGAACGAGAAGCTGCAGGACGCAATGCTGGACGTGCGCATCCAGAAG
TCACCATCGATTGCCCTGCTCCACCAGGGACCCAACAAGCAGGCCGCAGA
AAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCAAGCTGGATAACAAGC
GCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGATGTGGAATACTACACC
CTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTGGGAGATGGCCGTGCT
CCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGCAGCGGCTGGGCAATA
TGCACAACTTTGCCCAGCAGTATGCACGCCTCATCTCGGACATGAATCCG
ATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCAACTCGATGCTTGCAA
TGTGCTAAGATATGCAGTGTGCGCCACATCCGCCGCAATTCGGAGGGACC
CAGTGAGCAACTCCTACCGGACTTTACTGCGAACACACCCACGCTGGCCA
TGAATCGGGAGCGTCGCAGCACGCCTCTGATCAGCTGCTGCAGCTGTTCA
GGACGATCTGACGGAGCGACGATTCCCGCGACGGAATGAGG
UFO11757.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RC | 3014 | CG42388-RC | 957..1973 | 83..1091 | 4705 | 98.3 | Plus |
| CG42388-RF | 2508 | CG42388-RF | 451..1467 | 83..1091 | 4705 | 98.3 | Plus |
| CG42388-RG | 5133 | CG42388-RG | 1833..2836 | 96..1091 | 4640 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9051467..9052118 | 409..1055 | 2800 | 97.4 | Plus |
| X | 23542271 | X | 9051183..9051412 | 182..411 | 1150 | 100 | Plus |
| X | 23542271 | X | 9051033..9051122 | 94..183 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:29 has no hits.
UFO11757.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:05 Download gff for
UFO11757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 953..1973 | 78..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:59 Download gff for
UFO11757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RF | 447..1467 | 78..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:30 Download gff for
UFO11757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RF | 447..1467 | 78..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:30 Download gff for
UFO11757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9051033..9051122 | 94..183 | 100 | -> | Plus |
| X | 9051185..9051410 | 184..409 | 100 | -> | Plus |
| X | 9051468..9052157 | 410..1091 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:59 Download gff for
UFO11757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8945066..8945155 | 94..183 | 100 | -> | Plus |
| arm_X | 8945218..8945443 | 184..409 | 100 | -> | Plus |
| arm_X | 8945501..8946190 | 410..1091 | 97 | | Plus |
