UFO11758.5prime Sequence
1114 bp (1013 high quality bases) assembled on 2012-06-28
> UFO11758.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGTCCGTGAGTCGAGTGAC
TATGATGCGAAAGGGCCACTCCGGGGAGGTAGCACGCAAGCCCAACACTG
TGGTGGTGTCGGTTCCACCGCTGGTGAAGAAGTCCAGCAAGAGCCGCTCG
TTCCACTTCCGCTATCTGGAGCTGTGCCGGGCCAAGAATCTGACGCCGGT
GCCGGAAATCCGCAGCAAGTCGAATGCGACCACCACCTTTCTGGAGCTGT
GCGGCGATAAGCTGGCGGTCAGCGATTGGCAGCTCCTAACCGAGGCGCTC
CACTATGATCTCGTGCTCCAGCAGCTGGTGGTGCGCCTGCGACGCACATA
TCCACAAACCAACATTGATCCCATTGACACCGAGAAACGAGCCCGACTTT
TTCGCCAGCGGCCAGTGATCTATACTCGCTTCATATTCAACAGTTTGGTC
CAGGCGATTGCCAACTGTGTTTCGAGCAACAAAAATCTAAGTGTGTTGAA
GCTGGAGGGATTGCCATTGCAGGATGGATATATCGAGACCATTGCCAAGG
CACTGGCAGACAACGAATGCCTCGAATCAGTGAGTTTTCGCAAATCCAAC
ATTGGCGATAAGGGCTGCGAGGTGGTGTGCAACACAGCCAAATACCTGAA
TCGCATCGAAGTGTTCGACCTCTCTGAATGCGGACTTACTTCCAAGGGAG
CCGAGCACGTGGCCGACATGCTCAAGATGCAAAAGATCACCCGTTTCACG
GAGGGATGGGAGAAGTCCCTCCGCTACCGTAGCGTCGATGTGAACACGAT
TGGCGGTCTGCGCACGGTTTTGTTGGCTGACACCCGGAGATTGGCGACGT
GGGCATCCCGGTGGATAACCGAGGTGTTGAAAGAGATGCTTGATAAAAAA
ATCGACATGAGGCTGCGGCCTGACGGATATCGGGGCAATCTATCTCGATT
GCCTGAGCTGATCACGCATTACGGAGTCATGTGCGAAACACGAGATCAGT
AGTCTGCACGAGTATCATGATCGTCTGCTGTACGAAGAGAACTGACGGTA
TGATTCAGTTGCTC
UFO11758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7886-RA | 3436 | CG7886-RA | 646..1618 | 81..1040 | 4500 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14629619..14629946 | 408..81 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 14629350..14629541 | 600..409 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 14629106..14629284 | 776..598 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 14628797..14628957 | 935..775 | 710 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:25:05 has no hits.
UFO11758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:01 Download gff for
UFO11758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1633 | 81..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:43 Download gff for
UFO11758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1633 | 81..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:18 Download gff for
UFO11758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1633 | 81..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:18 Download gff for
UFO11758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14628781..14628955 | 777..949 | 97 | <- | Minus |
| 3R | 14629106..14629282 | 600..776 | 100 | <- | Minus |
| 3R | 14629351..14629541 | 409..599 | 100 | <- | Minus |
| 3R | 14629619..14629946 | 81..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:43 Download gff for
UFO11758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10454828..10455004 | 600..776 | 100 | <- | Minus |
| arm_3R | 10455073..10455263 | 409..599 | 100 | <- | Minus |
| arm_3R | 10454503..10454677 | 777..949 | 97 | <- | Minus |
| arm_3R | 10455341..10455668 | 81..408 | 100 | | Minus |
