UFO11765.5prime Sequence
1088 bp (953 high quality bases) assembled on 2012-06-28
> UFO11765.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCAAAACTTGA
CCATGTTGGTGGCTGAAAGCAACAGCAGTAACAATAGTACAACCAACAGC
AATGAAAACAACAATAGTAGCAACACGCCAGTCAATTTCAAGCCAAAGGA
TACGAATGGCTGGAAGGATTACAAGAAACTAAAGACATATCTCATCCTAA
AGGATCAGCAAAGCGAAAAGGCATCTCATAAACCGGAGTCGGAGCGATCT
TATCTCCTGAGAAAACGCTCCACGCCCGCGGCCGAAAGAACCACTTTCGT
TTGCTACACCTGTGGCACGGACACGCCCTCCTCGCAACTTCGCCTTGTCT
ACTGCTGCCCGAATGCCGAAAGGGAGCCCTATTATCCATTCATCAAGACC
ATGAAGGTCTACAAAAACGCTAGTCCAATTAGCCCGCAAGGCATGGTCCA
GGTCTGCTCCACCTGCAACGAGAAGCACTCCGGCTTGGCGGAGGGCGGTC
CACCTCCAGCTTCATCCAGCATCCACTCCGCAGTGGGTGGAGGTTCGCCC
AGTGCTGGCCACTCGCTGGAATCGAATTCGGCCATGTACAGCACCAGTGG
AGCGATAACCGGAAATAGTGGGGCACAATTTGGGGGTCGTAACTCACCAT
CCGAGAAATCCCTGGCCAATTCGGACTCCATGAGTAATGTGCGATTTATG
GTAAGGAATTCGCCGATAACTGGTAGAACGATAGGGTCGGAATTGGAATT
CTTCTCTTCACTGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAATA
CGCCTGCGGCATCGAGCGTTCTGACAATTCAGATGAGTTCTGAGTCATTA
CTGGATTCTATCACAGGAGTCAGCGAGCTCGATATTCAATTACGCCCCCG
CCTTGCACTCGATCCAGTACTGTTGTAATTCATAGCAT
UFO11765.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| px-RB | 5214 | CG4444-RB | 308..971 | 85..748 | 3320 | 100 | Plus |
| px-RE | 8360 | CG4444-RE | 2140..2619 | 269..748 | 2400 | 100 | Plus |
| px-RA | 6842 | CG4444-RA | 2120..2599 | 269..748 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22540371..22540698 | 816..489 | 1625 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22540757..22540979 | 491..269 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 22543329..22543515 | 271..85 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6862 | 118..176 | 142 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1098..1176 | 118..196 | 142 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2419 | 118..175 | 128 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1153 | 118..164 | 111 | 74.5 | Plus |
UFO11765.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:08 Download gff for
UFO11765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RC | 297..1042 | 77..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:11 Download gff for
UFO11765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RB | 299..973 | 77..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:39 Download gff for
UFO11765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RB | 299..973 | 77..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:39 Download gff for
UFO11765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22543330..22543524 | 77..270 | 98 | == | Minus |
| 2R | 22540366..22540696 | 491..824 | 98 | <- | Minus |
| 2R | 22540758..22540977 | 271..490 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:11 Download gff for
UFO11765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18428263..18428482 | 271..490 | 100 | <- | Minus |
| arm_2R | 18427871..18428201 | 491..824 | 98 | <- | Minus |
| arm_2R | 18430835..18431029 | 77..270 | 98 | == | Minus |
