UFO11768.5prime Sequence
1140 bp (1030 high quality bases) assembled on 2012-06-28
> UFO11768.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGAAACTGTTCCTGCTAAC
TCTCTCCGCGGCTTTGGCCCTGGTGGCCGCCTCCCCGACCGGTCTGAACC
GCACCACCCTCCTGTCCCAGGGAGCCGAGGGTCGCATTGTCAACGGCTAC
CCAGCGCCCGAGGGCAAGGCTCCCTACATTGTGGGCCTGTTCATCCGTAC
CGATGGAAGCAACAGTGGTGCCGTTGGTGCTGGTACCATCATTGCCAACG
ACTGGATCCTGACTGCCGCCCATTGCTTGACCGGAGACTACGTGGAGATC
CACTACGGATCCAACTGGGGCTGGAACGGTGCCTACAGGCAGACCGTCCG
TCGCGACAACTTCATTAGCCACCCCGACTGGCCTTCCCAGGGCGGCCGAG
ACATTGGTCTGATCCGCACTCCCCATGTCGACTTCAACGGACTGATCAAC
AAGATCCCTCTGCCAAGCATGAACGAGCAGAACGACCGCTACCAGGACAC
CTGGTGCGTCGCTTGCGGATGGGGTGGTATGGACAACGGAAACCTGGCCG
ACTGGCTGCAGTGCGTCGATGTCCAGATCATCAGCAACAGCGAGTGCGAG
CAGGCCTACGGCTCGGTTGCCAGTACCGACATGTGCACCCGTCACGCCGA
CGGAAAGTCCGTGTGCGGAGGTGACTCCGGTGGCCCCCTGGTTACACACG
ACAATGCTCGTCTCGTCGGTGTGATCACCTTTGCCTCCGTCAGCTGCCAC
GACGGACCCTCTGGCTACACCCGCGTCTCGGACTACCTAGAATGGATCCG
CGACCAGACTGGCATCTCCTACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAA
TAAAAACGCCCGGCGGCACCGAGCGTCTGAACAATCAGATGGAGTTCTGA
GGTCATACTGAATCTATCACAGGAGTCAGCGAGCTCGATATCAGTACGCC
CGCCCTGCCACTCATCGCAGTACTGTTGAATTCATTAGCA
UFO11768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18180-RA | 901 | CG18180-RA | 19..811 | 80..872 | 3965 | 100 | Plus |
| CG18179-RA | 870 | CG18179-RA | 115..822 | 165..872 | 1680 | 82.7 | Plus |
| CG8329-RA | 910 | CG8329-RA | 469..767 | 552..850 | 385 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9641031..9641823 | 80..872 | 3965 | 100 | Plus |
| 3L | 28110227 | 3L | 9639385..9640092 | 165..872 | 1680 | 82.5 | Plus |
| 3L | 28110227 | 3L | 9638580..9638878 | 552..850 | 370 | 74.9 | Plus |
| 2L | 23513712 | 2L | 4950101..4950299 | 752..557 | 285 | 77.4 | Minus |
| 3R | 32079331 | 3R | 30489091..30489152 | 178..239 | 190 | 87.1 | Plus |
| 2L | 23513712 | 2L | 4952287..4952347 | 872..812 | 185 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:25:56 has no hits.
UFO11768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:10 Download gff for
UFO11768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 12..813 | 73..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:17 Download gff for
UFO11768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 15..816 | 73..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:44 Download gff for
UFO11768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 15..816 | 73..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:44 Download gff for
UFO11768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9641027..9641828 | 73..880 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:17 Download gff for
UFO11768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9634127..9634928 | 73..880 | 99 | == | Plus |
