UFO11772.5prime Sequence
956 bp (849 high quality bases) assembled on 2012-06-28
> UFO11772.5prime
TGAATAGGGAATTGGCCAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAAGAAAAGA
AGAATGGCGATGAATTAAACGACTTGCTGGACAGTGCTCTCCAGGATTTC
GATAAAAGTGGTGCCGGTGACCAAAAGGAGCCGTCCGCATCATCAGATGT
GGCGACCAACGCTGGACCTGAGGGCTCTGAGGATCCAGATGCGTTTTTCA
TTGAGCAGGCCAAGGTGCTGGCCGATCGCATGAACACGCTCTTCGGAGGT
CCGGACACGCCCAGTGGCGATATTCCGCCGCTGCCCCAGGATCCCGACCA
GATCATGGCCGGATTCAAGAAGATGGCCGAAGCGGCAGCGCTCACCTTGA
GCGGCGAAAATTCGGCCACCGACGAGGATGTCTCCAAGTATTCTGATAGC
ATTTCCCAGGCTCTCAAGGGTCTGCAAGAGGGCTCCGAGAACCTGGCTGC
TCCCGCCTCGGAGAACGACATAGCCAGCATGTTTGGTTCACTGAATCTTG
AAGGGGCTGGCGAGGGTGATGGAAACATGTTCCTACCATTCATGGAGGGC
ATGATGCAGAGCCTGCTCTCGGCGGAGATTCTGTTGCCCAGCATCCGGGA
GCTGCTGGAGAAGTACCCCAAGTACCTCGAGGAGAACGACGCCCAAGCTC
TCCGCTGAGGACAAGGAAAGGTACCAGAAGCAGATGGGAGCTGTACAGGT
GATTGAGGGGCATTTAACAGAGCGAGAGACCGAGATTCGGCCGCCGTGAA
GCGAGAAGAAGTTCCGCGTCGTGCTGGACGACATGCGCAACTGCAGACTA
CGCAGCGCGCAGAGATCTGGCGAGACGGCGGCGACTGCCCTCGGCGATCC
ACTGGCGGCGTAGCAGCGCGAACTGTTCCCATGCCAACCATGCAGCTTCT
AGACCA
UFO11772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 1596 | CG5325-RC | 480..1324 | 85..917 | 3680 | 97.1 | Plus |
| Pex19-RA | 1217 | CG5325-RA | 101..945 | 85..917 | 3680 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12094173..12094482 | 247..556 | 1505 | 99 | Plus |
| 2L | 23513712 | 2L | 12094547..12094714 | 555..723 | 795 | 99.4 | Plus |
| 2L | 23513712 | 2L | 12093994..12094111 | 134..251 | 560 | 98.3 | Plus |
| 2L | 23513712 | 2L | 12094767..12094888 | 719..840 | 325 | 95.2 | Plus |
| 2L | 23513712 | 2L | 12093862..12093913 | 85..136 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:33 has no hits.
UFO11772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:06 Download gff for
UFO11772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5325-RA | 92..943 | 85..926 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:01 Download gff for
UFO11772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..952 | 85..926 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:33 Download gff for
UFO11772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..952 | 85..926 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:33 Download gff for
UFO11772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12093858..12093910 | 81..133 | 96 | -> | Plus |
| 2L | 12093994..12094111 | 134..251 | 98 | -> | Plus |
| 2L | 12094178..12094481 | 252..555 | 99 | -> | Plus |
| 2L | 12094548..12094711 | 556..720 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:01 Download gff for
UFO11772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12093858..12093910 | 81..133 | 96 | -> | Plus |
| arm_2L | 12093994..12094111 | 134..251 | 98 | -> | Plus |
| arm_2L | 12094178..12094481 | 252..555 | 99 | -> | Plus |
| arm_2L | 12094548..12094711 | 556..720 | 99 | -> | Plus |
