UFO11775.5prime Sequence
1026 bp (925 high quality bases) assembled on 2012-06-28
> UFO11775.5prime
CAGTCGACATGAGCGCTCAACAATTTGAGCAAGAAGTTCTTCAAGCCCAC
AATTTATATCGGGCCAAGCATGGTGCTCAACCCTTGACTTTGAGTCCCAA
ACTGAATCGATTGGCCACGGAATGGGCCAATTATTTGCTGTCCAGAAATC
GCATGGAACATCGACAGAACAGTGGATATGGTGAGAACATTTACATGGCC
TCCGGGGGAAATCTGAAAGGTGCCGATGCCGTCAGATCCTGGTACGAAGA
GATTCGACAGTACAATTGGAATTCTCCGTCGTTTCAAGGTAACACCGGCC
ATTTCACTCAGGTGGTCTGGAAGAGCTCCACCGAGCTAGGCGTGGGTTTT
GCGAAGAGTGGCAGTACCATCTATGTTGTGTGCAACTACAATCCCCCTGG
CAACTACAACAACTTGTTCAGGGAGAATGTCGCACCCCCAATGCAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAGAGTTGTCC
ATATTGTCCACGTTTAATCAAACTGGTGAACTCACCCAGGATTGACTGAG
ACGAAAAACATATTCTCATAAACCTTAGGAATAGCAGTTTTCACGTACAC
GCCAATCTTGCGATATATGTGTAGACTGCGAATCGTCCTTGCTATTCACT
CAGAGCGATGAAACGGTTCAGTGCTC
UFO11775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16995-RA | 721 | CG16995-RA | 80..517 | 9..446 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2308305..2308531 | 132..358 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 2308142..2308249 | 24..131 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 2308579..2308668 | 357..446 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:09 has no hits.
UFO11775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:13 Download gff for
UFO11775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16995-RA | 76..520 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:25 Download gff for
UFO11775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16995-RA | 76..517 | 1..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:50 Download gff for
UFO11775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16995-RA | 76..517 | 1..446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:50 Download gff for
UFO11775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2308142..2308249 | 24..131 | 100 | -> | Plus |
| 2L | 2308305..2308531 | 132..358 | 100 | -> | Plus |
| 2L | 2308581..2308668 | 359..446 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:25 Download gff for
UFO11775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2308142..2308249 | 24..131 | 100 | -> | Plus |
| arm_2L | 2308305..2308531 | 132..358 | 100 | -> | Plus |
| arm_2L | 2308581..2308668 | 359..446 | 100 | == | Plus |
