UFO11778.5prime Sequence
1126 bp (1014 high quality bases) assembled on 2012-06-28
> UFO11778.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAAACTGTCC
GGTCTTAGGCGGTCCTTACCCAGGGACCAAGGATTGGGCAACTGCCTCAA
CGTGGCACTGATTTACTCAGCGCTCCTAGCACTTTTCATGACCGCCGCCC
AGGGACTACAGCTGAGTGCCTTCACAACGAAGACGCCGCGGGTCAGCAAG
TACACAACCAAGTCGCCATCGGCCTCCTCCATGAACCACGATGCCACCGC
CTCGCTGTATCGTTTCAATGCCACCAACGGCATCACCTGCATTCTGATGC
AGGTGGACGGACTTATCAGCATTAAGTACCGGAACAAGCTGAACGAGGAT
GTGGAGGCCGATTTGTACATGCCGGATGATCCCCAGCTGAGTGGCGAGTG
CGTCGAGTCCAACATGGAAATTCTCACCATGGACTTTAAGGGTTTCCGGC
TGTCCATGACATTTAAAAAGTCGTCCGGCGGCGAGGGTTGGTATATCAAC
CTGTTTGAACTGACCTACTCGTCCTCCAACTGGCTGTTCGAGCACCCCGA
TCGTCCCAACTTGGACGTGAGGCTGACCTCGCCCGCCCAGACGCCGATGT
ACTTCCCCACGCCGGTGGGTAAGTCCTATGTCTGCGACAAGGAGCAGACT
GTGATCATGTACGCCCCGCACGATTCCGGCGACCTGTCGGGGCATATAGC
CAAGCTGTATCTGCGCGACATGCACATGCAGAGCTTCATGTTCAAGGACA
GCGGCAAGTGGGGCCCGTCCTTCCACTGCAGCGCCACAGGATCCTATCGC
GACGAGACAGCGCCCCTGGCCGTGGGAACTGCACTGGCCATTGCCGTGCT
ACTGACCATATCCGGATACGCGGTTGGAGATACTTCAAATCAAGAAGTTC
AGTACGGTTCTATGGAGGCAAGCTTTCTAGACCATTCGTTTGGCCGCCGC
GGGCCCAGGTAGTGGTCATATCATAATCATAATCATAATCATATCCCACT
AGCCTAGGAGATCTGTCATGACTAGTGCTGATTCCACCCAATAAAACGCC
GGCGGCATCGACGTCTGACCATCGAT
UFO11778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32225-RA | 1293 | CG32225-RA | 115..999 | 86..967 | 4350 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20304711..20305112 | 920..519 | 2010 | 100 | Minus |
| 3L | 28110227 | 3L | 20305511..20305760 | 520..271 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 20306067..20306169 | 188..86 | 515 | 100 | Minus |
| 3L | 28110227 | 3L | 20305821..20305911 | 272..182 | 425 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:26:16 has no hits.
UFO11778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:14 Download gff for
UFO11778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 90..979 | 86..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:30 Download gff for
UFO11778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 115..1004 | 86..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:54 Download gff for
UFO11778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 115..1004 | 86..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:54 Download gff for
UFO11778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20304701..20305110 | 521..929 | 99 | <- | Minus |
| 3L | 20305511..20305759 | 272..520 | 100 | <- | Minus |
| 3L | 20305822..20305904 | 189..271 | 100 | <- | Minus |
| 3L | 20306067..20306169 | 86..188 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:30 Download gff for
UFO11778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20297801..20298210 | 521..929 | 99 | <- | Minus |
| arm_3L | 20298611..20298859 | 272..520 | 100 | <- | Minus |
| arm_3L | 20298922..20299004 | 189..271 | 100 | <- | Minus |
| arm_3L | 20299167..20299269 | 86..188 | 100 | | Minus |
