UFO11781.5prime Sequence
1125 bp (1013 high quality bases) assembled on 2012-06-28
> UFO11781.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGACTGATTTAAAGTTAACT
GTGGCACTAACCAGCGTTAATGCGGAGAATATGTCGCGGCACGACATGCT
TCAGTGGGTGAACAACATGGTCCACGGCCACTTCAAGAAGATCGAAGAGC
TGTGCTCAGGTGCTGCCTACTGCCAGATGATGGAGATGATCTTTCCCAAC
TGCATTAACCTGAAGCGCGTCAAGATGACCGCCAAACTAGAGCACGAGTA
TCTACACAATCTTAGGCTCTTCCAGGAAGCCTTCAATCGCTTGAAGCTGG
ACAAAACGGTGCCAATCGATCGACTGATCAAGGGACGCTTCCAGGACAAC
TTTGAGTTCCTGCAGTGGTTCAAGAAGTTCTTCGACTCGCAGGCTCCGGG
CTTGGAGAACATTAAGTCGCTGGCCAATGCGCCGTTGGCAAAGCCCATAA
AGCCGCGCCAATTCGCCAAGGAGCGATCACCAGTCAACGCCAATGATGAT
GCGCTCAAAGAGCTGATTGATGAAATGAAGAACCTAAGCCTGAAGCGGGA
GGACATCATGGAGGCCAGCAATCAGATCTACAACAAACTGCGCCTGGTCG
AGGATTTGGTCAACGACATGATCAACAACAACCAGCTAGTTGAGTTGTGC
AAACGCATTCAAGCGGTGCTCTACAAAACGATAGATGGTGAAATCAACGA
GGAACCCGTCGAGGTTAATGAGGATAATGGTGATGAAAGGCGCCGAACAC
GCGGATCCCAATGACGGATTATATGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAACGCCCGGCGCAACCGAGCGTCTGAACAAATCCAGATGGAGTT
CTGAGTCATTACTGATCTATCACAGAGTCAGGCGAGCCTCGATAATCAGT
ACGCCCCGCCCTGCCACTCCATCCGCAGTACTGTTGTAATCATTAGCATT
CTTGCGACTGGAAGCCATCCAAACG
UFO11781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18190-RB | 1077 | CG18190-RB | 281..1024 | 80..824 | 3670 | 99.6 | Plus |
| Eb1-RF | 1891 | CG3265-RF | 480..543 | 373..436 | 200 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18851960..18852576 | 824..207 | 3010 | 99.5 | Minus |
| 2R | 25286936 | 2R | 18852632..18852763 | 211..80 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 6753244..6753307 | 373..436 | 200 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:26 has no hits.
UFO11781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:16 Download gff for
UFO11781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 227..970 | 80..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:36 Download gff for
UFO11781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 281..1024 | 80..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:59 Download gff for
UFO11781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 281..1024 | 80..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:59 Download gff for
UFO11781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18851960..18852573 | 210..824 | 99 | <- | Minus |
| 2R | 18852634..18852770 | 77..209 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:36 Download gff for
UFO11781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14740139..14740275 | 77..209 | 96 | -> | Minus |
| arm_2R | 14739465..14740078 | 210..824 | 99 | <- | Minus |
