UFO11783.5prime Sequence
1100 bp (963 high quality bases) assembled on 2012-06-28
> UFO11783.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGTTGCTCTTGGGCCTGAA
ATACGCTCTTCTACTGGCCATTACCGGCTGTTTCCTGGTGCCAATCCATG
GATCAGGATCGGATACTGACCAGGTCCTGCCGCACCGCATCTACCGTCTG
CTGGACCGCCTCTCCGGAGGACGCCGCCTGAGTGCCAGCTCTACATTCGC
CCTGTTGCTCTCGCAGTTTCTGATAAAACAGAAACTGCGTTACGTGGCGC
CTACGCGTTACGAACGTCAGCTCTACTACCATCTGCTGCACAGGATGGAA
CACATCAGAAGGGGATCGGGTCTGGTTTCCAGGGAGCATGGTGTCCAGGG
GGAGATTCTCAGCATTGCCTTTCAGGCGAATGTGTTGCTGCTGCCTCCCT
CGCTGAAACTGGGCGAACTGAATGCCAATGGGGAGTACGAGCAGCTGGCC
GAGGTCTACCCGAAAGTGGTCAACGAGGGCCAGCTGAACAGGACGCAGTC
CGACCTCTGCCTCCGGGACATTGTGGAACTGAAGCCACCCCACTGCAAGC
TGCTCTCCGGCGAATGTTTGGAACTTTTGGCCAGTGATGCACCAGCCTAC
GGATACCAGAGAACCCATCAGGTCCTGCTGCTCTACGTGCTGGAGCATCA
GGCATGTGCCCCCCACCTCAGCCCACCTCATGTTTACGAACTGCTGGCCA
AGAGTCAGTGCGATGAGGTGGAACGCGAGCAGAACGCCATCCGGAGCCTG
GGGCTGCCAGTCGTGTATCGCGATCTGTATCTGGAGCAAGCCACCATCTG
CGGCCTGTTTGGCTACAATGAGTTTGTCAACTGGCGCAACGTAATGGAAA
TTGGCAGCTGGCTGGAGGGGGACTCGCCGACGATATGGATGTATTGGCTG
ACGACGACGATAGCAACACTAAGCGATTGGCCTTTGTCTCTAACTAATGC
ACTGCTGCTGCTGCCGCAAGCTTCTAGAATCATCGATTGGCCGTCGGCCC
AGTAACTGCTCAATCTATCCTATCTATCCTTATCCACTAGCTAGGAATCT
UFO11783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8401-RB | 1053 | CG8401-RB | 3..944 | 79..1014 | 4470 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16028605..16028805 | 79..279 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 16029491..16029660 | 671..840 | 835 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16029061..16029207 | 406..552 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 16028880..16029005 | 280..405 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 16029307..16029426 | 552..671 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 16029801..16029927 | 839..964 | 555 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:25:59 has no hits.
UFO11783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:11 Download gff for
UFO11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..944 | 77..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:20 Download gff for
UFO11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..944 | 77..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:57:45 Download gff for
UFO11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..944 | 77..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:57:45 Download gff for
UFO11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16028605..16028805 | 79..279 | 100 | -> | Plus |
| 2R | 16028880..16029005 | 280..405 | 100 | -> | Plus |
| 2R | 16029061..16029207 | 406..552 | 100 | -> | Plus |
| 2R | 16029308..16029425 | 553..670 | 100 | -> | Plus |
| 2R | 16029491..16029660 | 671..840 | 99 | -> | Plus |
| 2R | 16029803..16029982 | 841..1014 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:20 Download gff for
UFO11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11916110..11916310 | 79..279 | 100 | -> | Plus |
| arm_2R | 11916385..11916510 | 280..405 | 100 | -> | Plus |
| arm_2R | 11916566..11916712 | 406..552 | 100 | -> | Plus |
| arm_2R | 11916813..11916930 | 553..670 | 100 | -> | Plus |
| arm_2R | 11916996..11917165 | 671..840 | 99 | -> | Plus |
| arm_2R | 11917308..11917487 | 841..1014 | 93 | | Plus |
