UFO11786.5prime Sequence
1115 bp (1014 high quality bases) assembled on 2012-06-28
> UFO11786.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGGTCTCGCCCAAACGGAGA
CTAATCGACGATTCCATTGCTCCCTCAGCTGCCGATCTCCAGCGGACATA
CGACGGACATGATGGGCCTCACGTTTTCGGAACACCCGGCAATCAAGTCT
ACATTCGGGGGCAGAACGATGGCGTATACAAGGTGCCAGGAGTAGGTGGT
CAGTTCCATCACGCATCGTCGCCAGCAGATCACGTCTATACGGATGAGCA
GGGGATCACGTATGTGCACAAAAAAGACGCTGGAGGACCAGGAACACATA
CGCTTAGAGGACCAGGTCTAGCTGCTGTACAGCCCGCCTACTCCACTGTG
CAGCCTGCGGGACTTCGCAATCCCCAGTTTCATGTGGAGCGAAGTGGTCG
CACTGTGGATGTTGGTTCTGGAGGATTTGTCGTCCAAAGGAGCAGACGTA
GTCCTCAGTTCCATGTGGAGCGTCCTGGTCGCACTGTGGATGTGGGTTCC
GGAGGATTTTTTGTCCAAAGGGGCAGGCGTAGTCCCCAGTTTCCTGTGGA
GCGACCTTGGCAAAGGGCTTTGAAGGACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTATATATTTGCCAT
GTGAAAACGGGGCGAGAGTTGTCCATATGCCCGTTAATCAACTGTGAAAC
TCACCCAGGATGCTGAAACGAAAACATATTCTCAATAAGCTAAGCAATAG
CCAAGGCTTACGTAA
UFO11786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13749-RB | 897 | CG13749-RB | 75..624 | 79..628 | 2750 | 100 | Plus |
| CG13749-RB | 897 | CG13749-RB | 417..522 | 502..607 | 305 | 85.8 | Plus |
| CG13749-RB | 897 | CG13749-RB | 498..603 | 421..526 | 305 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8933817..8934105 | 340..628 | 1445 | 100 | Plus |
| 2R | 25286936 | 2R | 8933497..8933760 | 79..342 | 1320 | 100 | Plus |
| 2R | 25286936 | 2R | 8933898..8934003 | 502..607 | 305 | 85.8 | Plus |
| 2R | 25286936 | 2R | 8933979..8934084 | 421..526 | 305 | 85.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:26:45 has no hits.
UFO11786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:20 Download gff for
UFO11786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13749-RB | 75..624 | 79..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:47 Download gff for
UFO11786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13749-RB | 75..624 | 79..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:08 Download gff for
UFO11786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13749-RB | 75..624 | 79..628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:08 Download gff for
UFO11786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8933497..8933759 | 79..341 | 100 | -> | Plus |
| 2R | 8933819..8934105 | 342..628 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:47 Download gff for
UFO11786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4821002..4821264 | 79..341 | 100 | -> | Plus |
| arm_2R | 4821324..4821610 | 342..628 | 100 | == | Plus |
