UFO11787.5prime Sequence
1046 bp (940 high quality bases) assembled on 2012-06-28
> UFO11787.5prime
CAGTCGACATGCCGGCCTACCACTCGCAGATCAAGGAAGTGCGCCAGCAG
GTGGGCAACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGCGGGCCAGC
GCCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACTGTACTACT
TCAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCGACGTGGAT
CGCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTCAAGAAGCT
CAATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTACAGCCTGG
CCATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCATTGAACGCC
GTCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATGCGCCAGTA
CCTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGAGAAGGTCT
TCAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCTTCGCGAAG
AAAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCTTGCG
TATATATTTGCCCATGGTGAAAACGGGGCGAGAGTGTCCATATTGCCACG
TTTAAATCAAACTGTGAAACTCACCCAGGATGCTGAAACGAAAAACATAT
TCTCATAATCCTTTAGGAAAGGCAGTTCACCGTAACCGCCATTGCC
UFO11787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 1123 | CG4560-RE | 117..649 | 7..539 | 2665 | 100 | Plus |
| Arpc3A-RC | 814 | CG4560-RC | 117..649 | 7..539 | 2665 | 100 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 139..616 | 50..536 | 465 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15835195..15835547 | 187..539 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 15834912..15835086 | 14..188 | 875 | 100 | Plus |
| X | 23542271 | X | 17104648..17104808 | 536..376 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:26:48 has no hits.
UFO11787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-28 10:03:20 Download gff for
UFO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 110..652 | 1..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:49 Download gff for
UFO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 110..652 | 1..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:58:09 Download gff for
UFO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 110..652 | 1..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:58:09 Download gff for
UFO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15834912..15835086 | 14..188 | 100 | -> | Plus |
| 3R | 15835197..15835550 | 189..543 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:49 Download gff for
UFO11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11660634..11660808 | 14..188 | 100 | -> | Plus |
| arm_3R | 11660919..11661272 | 189..543 | 99 | == | Plus |
